Author

T. de Vries

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 2 Pharmacology & Toxicology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:cell signaling & trafficking· 2 Research Focus:protein folding & dynamics· 2 Organism:Arabidopsis· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

A. Leitner· 2 shared C. P. Sarnowski· 2 shared F. H.- T. Allain· 2 shared R. Aebersold· 2 shared A. Clark· 1 shared A. Jaber· 1 shared A. Knörlein· 1 shared A. M. Van Den Brink· 1 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersBiochemistry

A. Leitner

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Author profile →

4 papers

Recent·Most cited

Integrative solution structure of a PTBP1-viral IRES complex reveals strong compaction and ordering with residual conformational flexibility

G. Dorn, C. Gmeiner, T. de Vries, E. Dedic, M. Novakovic, F. F. Damberger, C. Maris, E. Finol, C. P. Sarnowski, J. Kolhbrecher, T. J. Welsh, S. Bolisetty, R. Mezzenga, R. Aebersold, A. Leitner, , F. H.- T. Allain

The paper determines the solution structure of a PTBP1-viral IRES complex using integrative modeling, revealing compaction, ordering, and residual flexibility essential for IRES-mediated translation.

bioRxiv · Jul 8, 2022Biochemistry

A highly sensitive protein-RNA cross-linking mass spectrometry workflow with enhanced structural modelling potential

C. P. Sarnowski, A. Knörlein, T. de Vries, M. Götze, I. Beusch, R. Aebersold, F. H.- T. Allain, J. Hall, A. Leitner

This paper improves a CLIR-MS workflow for protein-RNA cross-linking, increasing detected products and enabling structural restraint analysis.

bioRxiv · Mar 31, 2022Biochemistry

Expression levels of long noncoding natural antisense transcripts overlapping the UGT73C6 gene affect rosette size of Arabidopsis thaliana

S. K. Meena, M. Heidecker, S. Engelmann, A. Jaber, T. de Vries, K. Baumann-Kaschig, S. Abel, S.-E. Behrens, S. Gago-Zachert

This study identifies two lncNATs overlapping UGT73C6 in Arabidopsis thaliana that regulate rosette size by modulating cell proliferation and leaf growth through transcription factor regulation.

bioRxiv · Mar 1, 2021 · PreprintPlant Biology

CGRP-receptor family reveals endogenous GPCR agonist bias and its significance in primary human cardiovascular cells

A. Clark, N. Mullooly, D. Safitri, M. Harris, T. de Vries, A. M. Van Den Brink, D. R. Poyner, D. Gianni, M. Wigglesworth, G. Ladds

The paper demonstrates endogenous agonist bias at the calcitonin-like receptor in primary human cardiovascular cells, showing physiological consequences through RAMP switching.

bioRxiv · Dec 21, 2020 · PreprintPharmacology & Toxicology