Author

V. Ramachandran

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 3 Microbiology· 3 Biophysics· 1 Cell Biology· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Research Focus:cell type annotation· 3 Research Focus:host-pathogen & immune response· 3 Approach:deep learning· 2 Research Focus:differential expression· 2 Research Focus:ecology & biodiversity· 2 Assay:metagenomics· 2 Organism:plant (other)· 2

Frequent Co-Authors

P. Poole· 3 shared A. East· 2 shared A. Gopal· 2 shared N. Page· 2 shared R. Naniwadekar· 2 shared R. Wheatley· 2 shared S. Ghuman· 2 shared A. Bollmann-Giolai· 1 shared

Activity by Year

2018-2023 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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3 shared papersMicrobiology

P. Poole

Mutual co-authors in cluster

Author profile →

9 papers

Recent·Most cited

Mapping energy landscapes of homopolymeric RNAs via simulated tempering and deep unsupervised learning

V. Ramachandran, D. A. Potoyan

The paper maps temperature-dependent conformational free energy landscapes of homopolymeric RNAs using simulations and deep learning, revealing base-specific phase separation propensities.

bioRxiv · Oct 10, 2023 · PreprintBiophysics

Host-pathogen-vector continuum in a changing landscape: Drivers of Bartonella prevalence and evidence of historic spillover in a multi-host community

B. R. Ansil, A. Viswanathan, V. Ramachandran, H. M. Yeshwanth, A. Sanyal, U. Ramakrishnan

The paper investigates Bartonella prevalence in small mammals and ectoparasites, finding ectoparasites drive transmission and evidence of historic spillover.

bioRxiv · Sep 25, 2023 · PreprintEcology

Barley cultivars shape the abundance, phenotype, genotype and gene expression of their associated microbiota by differential root exudate secretion

A. Pacheco-Moreno, A. Bollmann-Giolai, G. Chandra, P. Brett, J. Davies, O. Thornton, P. Poole, V. Ramachandran, J. Brown, P. Nicholson, C. Ridout, S. DeVos, J. G. Malone

bioRxiv · Jul 5, 2023 · PreprintMicrobiology

Frugivory and seed predation of fishtail palm (Caryota mitis Lour.) on the remote oceanic island of Narcondam, India

A. Gopal, S. Ghuman, N. Page, V. Ramachandran, R. Naniwadekar

The paper examines seed dispersal and predation of Caryota mitis on Narcondam Island, finding that the endemic hornbill is the sole disperser and the invasive rodent is the sole predator, leading to low seed survival.

bioRxiv · Apr 6, 2023 · PreprintEcology

Factors governing attachment of Rhizobium leguminosarum to legume roots

J. Parsons, C. Cocker, A. East, R. Wheatley, V. Ramachandran, F. Kaschani, M. Kaiser, P. Poole

This study identifies 115 proteins required for Rhizobium leguminosarum attachment to pea roots under varying pH conditions, revealing complex mechanisms and no single essential protein for alkaline attachment.

bioRxiv · Nov 21, 2022 · PreprintMicrobiology

Novel inhibitors against COVID-19 main protease suppressed viral infection

V. Ramachandran, Y. Liu, Q. He, A. Tang, P. Ronaldson, D. Schenten, R. Chang

This study identifies novel small-molecule inhibitors of SARS-CoV-2 main protease that suppress viral replication in human cells.

bioRxiv · Nov 5, 2022 · PreprintPathology

Large frugivores matter more on an island: insights from island-mainland comparison of plant-frugivore communities

R. Naniwadekar, A. Gopal, N. Page, S. Ghuman, V. Ramachandran, J. Joshi

The paper compares plant-frugivore communities on an island and mainland, finding the island community more asymmetric and nested, with figs and the Narcondam Hornbill playing central roles.

bioRxiv · Jul 31, 2020Ecology

Lifestyle adaptations of Rhizobium from rhizosphere to symbiosis

R. Wheatley, B. Ford, L. Li, S. Aroney, H. Knights, R. Ledermann, A. East, V. Ramachandran, P. Poole

This study identifies genes critical for different stages of Rhizobium-legume symbiosis using INSeq, showing 603 genes are required for nodulation and N2 fixation, with 146 shared across stages.

bioRxiv · May 7, 2020Microbiology

A non-canonical arm of UPRER mediates longevity through ER remodeling and lipophagy.

J. R. Daniele, R. Higuchi-Sanabria, V. Ramachandran, M. Sanchez, J. Durieux, S. U. Tronnes, J. W. Paul, D. J. Esping, S. Monshietehadi, M. G. Metcalf, A. Dillin

This study identifies a non-canonical UPRER pathway that extends lifespan through ER remodeling and lipophagy, independent of chaperone function.

bioRxiv · Nov 15, 2018 · PreprintCell Biology