Author

Xinyi Ge

New York University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Cancer Biology· 1 Molecular Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 3 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

Christine VogeliD· 2 shared Huijing Zou· 2 shared Leoš Shivaya ValášekiD· 2 shared Solomon A. HaizeliD· 2 shared Alfredo Vidal CeballosiD· 1 shared Alice Nayoung Ko· 1 shared Alisha N. JonesiD· 1 shared Amy Lei· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMolecular Biology

Christine VogelORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Multi-level repression ensures tight translation control of C9ORF72

Solomon A. Haizel, Alfredo Vidal Ceballos, Alice Nayoung Ko, Lucas Lyu, Lauren Manning, Xinyi Ge, Violet Park, Huijing Zou, Churong Cheng, Richmond Afful, Serena Kher, Anissa Anindya Widjaja, Joanetta Jean-Baptiste, Sasha Khazhinsky, Pieter Spealman, , Christine Vogel

The paper investigates the multi-layered repression system controlling C9ORF72 translation and identifies strategies to rescue loss-of-function in disease.

bioRxiv · Aug 9, 2025 · PreprintMolecular Biology

SS18::SSX redistributes BAF chromatin remodelers selectively to activate and repress transcription

Jinxiu Li, Li Li, Kyllie Smith-Fry, Zaki F. Wilmot, Lara Carroll, Linda Morrison, Xinyi Ge, Mary Nelson, Lesley A. Hill, Xiaoyang Zhang, Torsten O. Nielsen, Martin Hirst, T. Michael Underhill, Bradley R. Cairns, Kevin B. Jones

This paper shows SS18::SSX fusion protein alters BAF chromatin remodeler distribution, leading to transcriptional activation and repression by changing histone modifications at regulatory regions.

bioRxiv · May 14, 2024 · PreprintCancer Biology

Regulatory start-stop elements in 5' untranslated regions pervasively modulate translation

Justin Rendleman, Solomon A. Haizel, Shaohuan Wu, Junjie Liu, Xinyi Ge, Huijing Zou, Mahabub Pasha Mohammad, Matthew Pressler, Shuvadeep Maity, Vladislava Hronová, Zhaofeng Gao, Anna Herrmannová, Amy Lei, Kristina Allgoewer, Daniel Sultanov, , Christine Vogel

The paper identifies start-stop elements in 5' UTRs that repress translation by halting ribosomes, showing their prevalence in human genes and impact on cellular processes.

bioRxiv · Jul 26, 2021 · PreprintSystems Biology