Author

Y. Sugiyama

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 4 Microbiology· 3 Animal Behavior & Cognition· 1 Biochemistry· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 7 Assay:metagenomics· 5 Research Focus:ecology & biodiversity· 4 Research Focus:host-pathogen & immune response· 3 Organism:human· 3 Approach:statistical model· 3 Assay:behavioral assay· 2 Research Focus:benchmarking· 2

Frequent Co-Authors

S. Matsuoka· 5 shared H. Doi· 4 shared E. Kawaguchi· 2 shared H. Sato· 2 shared T. Osono· 2 shared T. Tanaka· 2 shared A. J. Carter· 1 shared A. Taketomi· 1 shared

Activity by Year

2018-2024 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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5 shared papersEcology

S. Matsuoka

Mutual co-authors in cluster

Author profile →

10 papers

Recent·Most cited

Two species of the Entolomaquadratum-murrayi complex from Japan, E. kermesinum sp. nov. and E. flavescens sp. nov.

H. Sato, O. Satomi, Y. Sugiyama

The paper describes two new species of Entoloma from Japan, distinguishing them from similar species using molecular phylogenetics and morphological features.

bioRxiv · Apr 11, 2024 · PreprintMicrobiology

Types of anomalies in two-dimensional video-based gait analysis in uncontrolled environments

Y. Sugiyama, K. Uno, Y. Matsui

This study identifies four types of anomalies in 2D video-based gait analysis using OpenPose in uncontrolled environments and develops a workflow to correct them.

bioRxiv · Mar 7, 2022Physiology

Influence of DNA extraction kits on freshwater fungal DNA metabarcoding

S. Matsuoka, Y. Sugiyama, M. Nagano, H. Doi

This study evaluates the impact of DNA extraction kits on fungal DNA metabarcoding using freshwater samples, finding no significant differences in OTU counts or composition between kits.

bioRxiv · Oct 19, 2021Microbiology

Why do some primate mothers carry their infant's corpse? A cross-species comparative study

E. Fernandez-Fueyo, Y. Sugiyama, T. Matsui, A. J. Carter

This study examines why some primate mothers carry their infant's corpse, analyzing 409 cases across 50 species and finding no strong predictors for the behavior but a link between infant age and carrying duration.

bioRxiv · Jan 12, 2021Animal Behavior & Cognition

Evaluation of seasonal dynamics of fungal DNA assemblages in a flow-regulated stream in a restored forest using eDNA metabarcoding

S. Matsuoka, Y. Sugiyama, Y. Shimono, M. Ushio, H. Doi

This study uses eDNA metabarcoding to detect seasonal fungal community dynamics in a forest stream over two years, finding regular annual periodicity and variation among functional groups.

bioRxiv · Dec 10, 2020Ecology

Evaluation of host effects on ectomycorrhizal fungal community compositions in a forest landscape in northern Japan

S. Matsuoka, Y. Sugiyama, R. Tateno, S. Imamura, E. Kawaguchi, T. Osono

The paper evaluates how host species influence ectomycorrhizal fungal community compositions in a forest landscape, finding host preference is a primary determinant.

bioRxiv · Nov 7, 2019Ecology

Inverse correlation between heme synthesis and the Warburg effect in cancer cells

Y. Sugiyama, E. Takahashi, K. Takahashi, M. Nakajima, T. Tanaka, S.-i. Ogura

This study shows that promoting heme synthesis in cancer cells reduces the Warburg effect by shifting energy metabolism from glycolysis to oxidative phosphorylation.

bioRxiv · Aug 30, 2019 · PreprintBiochemistry

Spatial structures of fungal DNA assemblages revealed with eDNA metabarcoding in a forest river network in western Japan

S. Matsuoka, Y. Sugiyama, H. Sato, I. Katano, K. Harada, H. Doi

The paper investigates fungal DNA assemblages in river water using eDNA metabarcoding and finds they are more similar within than between branches and more similar between closer branches.

bioRxiv · May 16, 2019Ecology

Biogeographic patterns of ectomycorrhizal fungal communities associated with Castanopsis sieboldii across the Japanese archipelago

S. Matsuoka, T. Iwasaki, Y. Sugiyama, E. Kawaguchi, H. Doi, T. Osono

The paper examines biogeographic patterns of ectomycorrhizal fungal communities associated with Castanopsis sieboldii across Japan, finding that host genotypes influence these patterns, though climatic and spatial factors have greater explanatory power.

bioRxiv · May 9, 2019Ecology

USP15 participates in HCV propagation through the regulation of viral RNA translation and lipid droplet formation

S. Kusakabe, T. Suzuki, Y. Sugiyama, S. Haga, K. Horike, M. Tokunaga, J. Hirano, Z. He, D. V. Chen, H. Ishiga, Y. Komoda, C. Ono, T. Fukuhara, M. Yamamoto, M. Ikawa, , Y. Matsuura

This study identifies USP15 as a host factor for HCV propagation, showing it regulates viral RNA translation and lipid droplet formation in hepatic cells.

bioRxiv · Oct 2, 2018Microbiology