Author

Yigal Agam

Illumina (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:mouse· 1 Organism:non-human primate· 1

Frequent Co-Authors

Kristina M. FontaneziD· 2 shared Pabodha HettigeiD· 2 shared AA May-Zhang· 1 shared Aaron A. May-ZhangiD· 1 shared Ahmad Osman· 1 shared Bryan W. LuikartiD· 1 shared Chris D’AmatoiD· 1 shared Corey E. HayfordiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersGenomics

Kristina M. FontanezORCID

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2 papers

Recent·Most cited

Intrinsic molecular identifiers enable robust molecular counting in single-cell sequencing

Kristina M. Fontanez, Yigal Agam, Sophia Bevans, Aaron A. May-Zhang, Corey E. Hayford, Yi Xue, Jacob S. A. Ishibashi, Rachael Komuhendo, Lucas Yoder, Pabodha Hettige, Hannah Rickner, Jesse Q. Zhang, Ahmad Osman, Chris D’Amato, Trinity Smithers, , Robert H. Meltzer

The paper introduces PIPseq V, a single-cell RNA sequencing method using Intrinsic Molecular Identifiers (IMIs) to improve transcript counting and reduce biases compared to traditional UMIs.

bioRxiv · Oct 4, 2024 · PreprintGenomics

Single-cell analysis of the nervous system at small and large scales with instant partitions

Paul W. Frazel, K Fricano-Kugler, AA May-Zhang, Michael R. O’Dea, P Prakash, NM Desmet, H Lee, RH Meltzer, Kristina M. Fontanez, Pabodha Hettige, Yigal Agam, Gila Lithwick‐Yanai, Doron Lipson, Bryan W. Luikart, Jeremy S. Dasen, Shane Antony Liddelow

The paper benchmarks PIPseq, a single-cell RNA sequencing method, across different scales and models, showing its ability to detect cell types and differentially expressed genes.

bioRxiv · Jul 14, 2023 · PreprintNeuroscience