Author

Zhenqing Ye

Mayo ClinicPrimary ORCID profile (0009-0008-8336-0410 · 3 papers)Unclaimed ORCID profile · follow to get notified of new preprints

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Zhenqing YeiD3 papers · The University of Texas at San Antonio Health Science Center

Biology Disciplines

Click to filter author papers

Genomics· 2 Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:cancer & tumor microenvironment· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:fine-mapping· 1

Frequent Co-Authors

Duan LiuiD· 2 shared Huanyao GaoiD· 2 shared Jeong‐Heon LeeiD· 2 shared Liewei WangiD· 2 shared Liguo WangiD· 2 shared Lixuan WeiiD· 2 shared Richard M. WeinshilboumiD· 2 shared Tamás ÖrdögiD· 2 shared

Activity by Year

2017-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Duan LiuORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Glucocorticoids Unmask Silent Non-Coding Genetic Risk Variants for Common Diseases

Thanh Thanh L. Nguyen, Huanyao Gao, Duan Liu, Trudy Janice Philips, Zhenqing Ye, Jeong‐Heon Lee, Geng‐Xian Shi, Kaleigh M. Copenhaver, Lingxin Zhang, Lixuan Wei, Jia Yu, Huan Zhang, Abhijeet S. Barath, Maggie Luong, Cheng Zhang, , Richard M. Weinshilboum

The paper shows glucocorticoid exposure reveals the function of non-coding genetic variants linked to disease risk by influencing gene expression in relevant biological processes.

Nucleic Acids Research · Nov 11, 2022Peer-reviewedGenomics

Glucocorticoids Mediate Transcriptome-wide Alternative Polyadenylation: Mechanisms and Functional Implications

Thanh Thanh L. Nguyen, Duan Liu, Huanyao Gao, Zhenqing Ye, Jeong‐Heon Lee, Lixuan Wei, Jia Yu, Lingxin Zhang, Liewei Wang, Tamás Ördög, Richard M. Weinshilboum

This study shows glucocorticoids regulate alternative polyadenylation in human B-lymphoblastoid cells, affecting gene function and immune-related pathways.

bioRxiv · Mar 30, 2022 · PreprintGenomics

CircularLogo: A lightweight web application to visualize intra-motif dependencies

Zhenqing Ye, Tao Ma, Michael T. Kalmbach, Surendra Dasari, Jean‐Pierre Kocher, Liguo Wang

CircularLogo visualizes intra-motif dependencies in DNA/RNA sequences through an interactive web application.

BMC Bioinformatics · May 22, 2017Peer-reviewedBioinformatics

Prevailing homozygous deletion of interferon and defensin genes in human cancers

Zhenqing Ye, Haidong Dong, Ying Li, Haojie Huang, Han Liang, Jean-Pierre A. Kocher, Liguo Wang

The paper identifies widespread homozygous deletions of interferon and defensin genes in human cancers, linked to poor patient survival and altered TNF/IFNγ gene expression.

bioRxiv · Jan 19, 2017 · PreprintImmunology