Author

Samuel W. M. Gatesy

Northwestern UniversityORCID 0000-0001-5271-8143Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Alan R. HauseriD· 2 shared Egon Anderson OzeriD· 2 shared Alexander V. MishariniD· 1 shared Alexandra C. McQuattie‐PimenteliD· 1 shared Ali MahmoudiD· 1 shared Aliki ValdesiD· 1 shared Alvaro DonayreiD· 1 shared Amy LudwigiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersMicrobiology

Alan R. HauserORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Transposon insertion sequencing of Pseudomonas aeruginosa identifies multiple intersecting pathways essential for extreme colistin resistance

Madeleine Vessely, Ryan P. Kich, Samuel W. M. Gatesy, Hanna K. Bertucci, Aliki Valdes, Clara Luczak, Shradha Rao, Artur Muszyński, Parastoo Azadi, Casey N. Kellogg, Brandon Lyon Jutras, John J. Mekalanos, Alan R. Hauser, Egon Anderson Ozer, Kelly E. R. Bachta

This study identifies 13 genes essential for extreme colistin resistance in Pseudomonas aeruginosa using transposon insertion sequencing and validates novel pathways contributing to resistance.

PLoS Pathogens · Sep 8, 2026Peer-reviewedMicrobiology

A distinctive evolution of alveolar T cell responses is associated with clinical outcomes in unvaccinated patients with SARS-CoV-2 pneumonia

Nikolay S. Markov, Ziyou Ren, Karolina J. Senkow, Rogan A. Grant, Catherine A. Gao, Elizabeth S. Malsin, Lango Sichizya, Hermon G. Kihshen, Kathryn A. Helmin, Milica Jovisic, Jason M Arnold, Xóchitl G. Pérez-Leonor, Hiam Abdala‐Valencia, Suchitra Swaminathan, Julu Nwaezeapu, , Karen M. Ridge

The paper examines alveolar T cell responses in SARS-CoV-2 pneumonia patients, finding that early interferon signaling and targeting of structural proteins correlate with better clinical outcomes.

Nature Immunology · Aug 13, 2024Peer-reviewedSystems Biology