Markus Axer

Brain FACTs: A same-section workflow for Fiber Architecture, Cytoarchitecture and cell Types in large-scale brain sections

This paper introduces a workflow combining 3D-PLI, immunohistochemistry, and Nissl staining to map fiber architecture and cell types in brain sections with high resolution and reduced inter-subject variability.

Precise MRI-Histology Coregistration of Paraffin-Embedded Tissue with Blockface Imaging

This paper develops a pipeline for precise MRI-histology coregistration using blockface imaging, achieving high alignment accuracy for neurodegenerative disease research.

HippoMaps: Multiscale cartography of the human hippocampal formation

HippoMaps provides a toolbox and data warehouse for mapping and analyzing hippocampal data across multiple modalities and scales.

Evaluation of surface-based hippocampal registration using ground-truth subfield definitions

This paper introduces a surface-based hippocampal registration method that improves subfield alignment across different morphologies.

Imaging crossing fibers in mouse, pig, monkey, and human brain using small-angle X-ray scattering

This paper demonstrates the use of small-angle X-ray scattering (SAXS) to detect myelinated axon crossings in multiple species, providing a ground truth for validating other imaging methods.

Post mortem mapping of connectional anatomy for the validation of diffusion MRI

This paper reviews post mortem methods to validate diffusion MRI tractography and microstructural properties of axon bundles.

MAGIC: A label-free fluorescence method for 3D high-resolution reconstruction of myelinated fibers in large volumes

The paper introduces MAGIC, a label-free fluorescence method for 3D high-resolution reconstruction of myelinated fibers in large volumes, demonstrating its application on multiple species brain samples.