Author

Charles Poncet

Institut National de Recherche pour l'Agriculture, l'Alimentation et l'EnvironnementORCID 0000-0003-3376-347XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 5 Genetics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 7 Assay:whole-genome sequencing· 7 Research Focus:gene regulatory network inference· 4 Research Focus:variant calling· 3 Approach:experimental assay· 2 Organism:multiple species· 2 Organism:zebrafish· 2 Approach:Bayesian inference· 1

Frequent Co-Authors

Anastasia BestiniD· 4 shared Florence PhocasiD· 4 shared Pierrick HaffrayiD· 4 shared Yann GuigueniD· 4 shared Cécile DonnadieuiD· 3 shared Edwige Quillet· 3 shared Olivier BoucheziD· 3 shared Amaury HerpiniD· 2 shared

Activity by Year

2020-2025 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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4 shared papersGenetics

Anastasia BestinORCID

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7 papers

Recent·Most cited

In-depth investigation of genome to refine QTL positions for spontaneous sex-reversal in XX rainbow trout

Audrey Dehaullon, Clémence Fraslin, Anastasia Bestin, Charles Poncet, Yann Guiguen, Edwige Quillet, Florence Phocas

The paper investigates QTL regions associated with spontaneous sex-reversal in XX rainbow trout using genome-based approaches and statistical methods to identify potential sex-modifier genes.

PLoS ONE · May 7, 2025Peer-reviewedGenetics

Multi-genome comparisons reveal gain-and-loss evolution of the anti-Mullerian hormone receptor type 2 gene, an old master sex determining gene, in Percidae

Heiner Kuhl, Peter T. Euclide, Christophe Klopp, Cédric Cabau, Margot Zahm, Céline Lopez‐Roques, Carole Iampietro, Claire Kuchly, Cécile Donnadieu, Romain Feron, Hugues Parrinello, Charles Poncet, Lydia Jaffrelo, Carole Confolent, Ming Wen, , Yann Guiguen

The paper compares genomes across multiple fish species to study the evolutionary changes in the amhr2bY gene, a key sex-determining gene, revealing gains and losses in different Percidae species.

bioRxiv · Nov 13, 2023 · PreprintGenomics

Development of a high-density 665 K SNP array for rainbow trout genome-wide genotyping

Maria Bernard, Audrey Dehaullon, Guangtu Gao, Katy Paul, Henri Lagarde, Mathieu Charles, Martin Prchal, Jeanne Danon, Lydia Jaffrelo, Charles Poncet, Pierre Patrice, Pierrick Haffray, Edwige Quillet, Mathilde Dupont‐Nivet, Yniv Palti, , Florence Phocas

The paper develops a high-density 665 K SNP array for rainbow trout and demonstrates its utility in detecting linkage disequilibrium at shorter genomic distances.

Frontiers in Genetics · Jul 18, 2022Peer-reviewedGenomics

The genomics of linkage drag in sunflower

Kaichi Huang, Mojtaba Jahani, Jérôme Gouzy, Alexandra Legendre, Sébastien Carrère, José M. Lázaro-Guevara, Eric Gerardo González Segovia, Marco Todesco, Baptiste Mayjonade, Nathalie Rodde, Stéphane Cauet, Isabelle Dufau, S. Evan Staton, Nicolas Pouilly, Marie‐Claude Boniface, , Loren H. Rieseberg

This study analyzes the genomic and phenotypic impacts of wild introgressions in sunflower, finding that while some traits improve, most introgressions negatively affect yield and quality.

bioRxiv · Jun 7, 2022 · PreprintGenomics

Whole-genome sequencing identifies interferon induced protein IFI6 as a strong candidate gene for VNN resistance in European sea bass

Emilie Delpuech, Marc Vandeputte, Romain Morvezen, Anastasia Bestin, Mathieu Besson, Joseph Brunier, Aline Bajek, Boudjema Imarazene, Yoannah François, Olivier Bouchez, Xavier Cousin, Charles Poncet, Thierry Morin, Jean-Sébastien Bruant, Béatrice Chatain, , François Allal

bioRxiv · May 31, 2022 · PreprintGenetics

An ancient truncated duplication of the anti-Mullerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Ming Wen, Qiaowei Pan, Elodie Jouanno, Jérôme Montfort, Margot Zahm, Cédric Cabau, Christophe Klopp, Carole Iampietro, Céline Lopez‐Roques, Olivier Bouchez, Adrien Castinel, Cécile Donnadieu, Hugues Parrinello, Charles Poncet, Elodie Belmonte, , Yann Guiguen

The paper identifies a truncated duplication of the amhr2 gene on the Y chromosome in Pangasiid catfishes as a conserved master sex-determining gene.

Molecular Ecology Resources · Apr 16, 2022Peer-reviewedGenomics

Genetic determinism of spontaneous masculinisation in XX female rainbow trout: new insights using medium throughput genotyping and whole-genome sequencing

Clémence Fraslin, Florence Phocas, Anastasia Bestin, Mathieu Charles, Maria Bernard, Francine Krieg, Nicolas Dechamp, Céline Ciobotaru, Chris Hozé, Florent Petitprez, Marine Milhes, Jérôme Lluch, Olivier Bouchez, Charles Poncet, Philippe Hocdé, , Edwige Quillet

The paper investigates the genetic basis of spontaneous masculinization in XX female rainbow trout using GWAS and WGS, identifying candidate genes associated with maleness.

Scientific Reports · Oct 19, 2020Peer-reviewedGenomics