Author

Pin-Jou Wu

Max Planck Institute for BiologyORCID 0000-0001-7158-1429Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:Arabidopsis· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:genetic perturbation / CRISPR· 1

Frequent Co-Authors

Alexander KanitziD· 1 shared Asier Gonzalez‐UriarteiD· 1 shared Benoît P. NicoletiD· 1 shared Chelsea HerdmaniD· 1 shared Chi-Lam PooniD· 1 shared Christina HerrmanniD· 1 shared Christina M. FitzsimmonsiD· 1 shared Detlef WeigeliD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Alexander KanitzORCID

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2 papers

Recent·Most cited

Plant BiologyNew PhytologistPeer-reviewedJan 7, 2026

Cell-type specific gating of gene regulatory modules as a hallmark of early immune responses in Arabidopsis leaves

Shanshan Wang, Ilja Bezrukov, Pin-Jou Wu…·Detlef Weigel

The paper examines cell-type specific gene regulatory responses in Arabidopsis during immune activation, identifying distinct defense strategies and regulatory modules.

6 citationstop 1%

Arabidopsisbulk RNA-seq

𝕏 PostBluesky

BioinformaticsRNAPeer-reviewedOct 10, 2023

Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data

Sam Bryce-Smith, Dominik Bürri, Matthew R. Gazzara…·Mihaela Zavolan

The paper benchmarks eight tools for identifying and quantifying alternative polyadenylation sites from RNA-seq data using real, synthetic, and 3'-end sequencing data.

18 citations

bulk RNA-seqbenchmark study

𝕏 PostBluesky