Author

Sophie N. Liu

University of California San DiegoORCID 0000-0001-7934-8605Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Developmental Biology· 1 Immunology· 1 Molecular Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Approach:statistical model· 3 Research Focus:cell-cell communication· 2 Approach:experimental assay· 2 Assay:imaging· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

Dexter R. PrattiD· 2 shared Trey E. IdekeriD· 2 shared Adriana PiteaiD· 1 shared Alexander R. PicoiD· 1 shared Alexandre Rosa CamposiD· 1 shared Anna BäckströmiD· 1 shared Benjamin M. GyoriiD· 1 shared Boyce E. GriffithiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 11 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Dexter R. PrattORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

ImmunologyThe Journal of ImmunologyPeer-reviewedJul 28, 2026

Sustained Humoral Activation through self-amplifying mRNA Vaccination Enhances Longitudinal Antibody Function in a Phase III Trial

Kate S Levine, Ross Blanc, Qixin Wang…·Ryan P. McNamara

This study compares antibody responses between two mRNA vaccines, finding that sa-mRNA elicited sustained, activating antibodies with broader coverage against SARS-CoV-2 variants.

DOI 10.1093/jimmun/vkag141.1295

humanbulk RNA-seq

𝕏 PostBluesky

Developmental BiologybioRxivPreprintOct 8, 2024

A Combined Computational Fluid Dynamics Modeling and Geometric Morphometrics Methods Approach to Quantifying Hemodynamic and Anatomical Features of Embryonic Chick Heart Anatomies Reconstructed from Light Sheet Fluorescence Microscopy Imaging

Kirsten Giesbrecht, Simone Rossi, Sophie N. Liu…·Boyce E. Griffith

DOI 10.1101/2024.10.08.611246

imagingstatistical model

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedMar 1, 2023

NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange

Rudolf Pillich, Jing Chen, Christopher Churas…·Dexter R. Pratt

NDEx IQuery provides a tool for network-based gene set analysis using diverse pathways and integrates with existing resources to enhance pathway interpretation.

40 citationstop 5%

statistical modelgene regulatory network inference

𝕏 PostBluesky

Molecular BiologyVirusesPeer-reviewedMar 15, 2022

A BioID-derived proximity interactome for SARS-CoV-2 proteins

Danielle G. May, Laura Martin‐Sancho, Valesca Anschau…·Kyle J. Roux

This study maps the SARS-CoV-2 virus-host interactome using BioID in A549 cells and provides a public resource for analyzing host-viral protein associations.

50 citationstop 3%

humanproteomics

𝕏 PostBluesky

Systems BiologyNaturePeer-reviewedNov 24, 2021

Mapping cell structure across scales by fusing protein images and interactions

Yue Qin, Edward L. Huttlin, Casper F. Winsnes…·Trey E. Ideker

The paper integrates protein imaging and interaction data to create a unified map of eukaryotic cell structure, revealing new subcellular systems and protein associations.

82 citationstop 3%

humanimaging

𝕏 PostBluesky