Author

Monica Valeria Estrada

University of California San DiegoORCID 0000-0001-9846-8223Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:deconvolution· 1

Frequent Co-Authors

Alfredo MolinoloiD· 1 shared Anne KrogsdamiD· 1 shared Antonia D. BoyeriD· 1 shared Christina PlattneriD· 1 shared Christine LawsoniD· 1 shared Clemens Mayer· 1 shared Colin C. AndersoniD· 1 shared Cray Minor· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperCancer Biology

Alfredo MolinoloORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintSep 12, 2025

Ovarian Tumor FAK Inhibition Releases Omega-3 Fatty Acids Stimulating GATA6 Peritoneal Macrophage CXCL13 Production Enhancing Immunotherapy

Xiao Lei Chen, Kevin M. Tharp, Marjaana Ojalill…·David D. Schlaepfer

This study shows FAK inhibition in ovarian tumors increases macrophage CXCL13 production via omega-3 fatty acids, enhancing B cell infiltration and immunotherapy response.

DOI 10.1101/2025.09.12.675975

mousehuman

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BioinformaticsGenome MedicinePeer-reviewedMay 24, 2019

✦ In-depth digest

Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

Francesca Finotello, Clemens Mayer, Christina Plattner…·Zlatko Trajanoski

quanTIseq estimates absolute fractions of ten immune cell types from bulk RNA-seq; across TCGA, CXCL9/CXCR3 expression, not mutational load, tracks CD8+ T cell infiltration.

1,546 citationstop 1%

humanbulk RNA-seq

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