Author

Werner Ruppitsch

Austrian Agency for Health and Food SafetyORCID 0000-0001-9940-3333Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:host-pathogen & immune response· 2 Organism:human· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Adriana Cabal RoseliD· 2 shared Alexander MellmanniD· 1 shared Alexandra HolzeriD· 1 shared Amy C. PickeringiD· 1 shared Antje FliegeriD· 1 shared Ariane Tatjana PietzkaiD· 1 shared Christian BrandtiD· 1 shared Christian KöhleriD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersMicrobiology

Adriana Cabal RoselORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

A single transcriptional regulator is crucial for the adaptation of Staphylococcus aureus to diverse niches

Claus Vogl, Lynette Caitlin Mikula, Helene Marbach, Katharina Mayer-Weihrauch, Sebastian Herndler, Leonie Breitschopf, Amy C. Pickering, Mary-Elizabeth Jobson, Adriana Cabal Rosel, Nora Dinhopl, Igor Loncaric, Werner Ruppitsch, Lindsey Neil Shaw, Orla M. Keane, J. Ross Fitzgerald, , Tom Grunert

This study shows that the transcriptional regulator SigB is crucial for Staphylococcus aureus adaptation to different niches, with SigB-deficient strains evolving in persistent mastitis due to the cost of phenotypic plasticity.

bioRxiv · Aug 1, 2025 · PreprintMicrobiology

Accurate and Reproducible Whole-Genome Genotyping for Bacterial Genomic Surveillance with Nanopore Sequencing Data

Karola Prior, Karsten Becker, Christian Brandt, Adriana Cabal Rosel, Johanna Dabernig‐Heinz, Christian Köhler, Mara Lohde, Werner Ruppitsch, Franziska Schuler, Gabriel E. Wagner, Alexander Mellmann

This paper evaluates recent improvements in Oxford Nanopore sequencing for bacterial genomic surveillance, showing that new software tools significantly enhance accuracy and reproducibility.

Journal of Clinical Microbiology · Jun 13, 2025Peer-reviewedBioinformatics

High density genomic surveillance and risk profiling of clinical Listeria monocytogenes subtypes in Germany, 2018-2021

Sven Halbedel, Sabrina Wamp, Raskit Lachmann, Alexandra Holzer, Ariane Tatjana Pietzka, Werner Ruppitsch, Hendrik Wilking, Antje Flieger

The paper analyzes genomic data from Listeria monocytogenes isolates in Germany to identify virulent and hypovirulent clones and their epidemiological patterns.

Genome Medicine · Oct 7, 2024Peer-reviewedMicrobiology