Author

Alexandra R. Harris

National Institutes of HealthORCID 0000-0002-1049-3131Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Francis MakokhaiD· 2 shared Shahin SayediD· 2 shared Stefan AmbsiD· 2 shared Alejandro A. SchäfferiD· 1 shared Andrew Martinez· 1 shared Aravind SrinivasaniD· 1 shared Binbin WangiD· 1 shared Chi‐Ping DayiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Francis MakokhaORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 19, 2025

Single-cell-guided identification of logic-gated antigen combinations for designing effective and safe CAR therapy

Sanna Madan, Tiangen Chang, Alexandra R. Harris…·Eytan Ruppin

This paper introduces LogiCAR designer, a computational method using single-cell transcriptomics to identify logic-gated antigen combinations for CAR therapy, showing improved efficacy and safety compared to existing approaches.

7 citations

humanscRNA-seq

𝕏 PostBluesky

Genetic & Genomic MedicineFrontiers in OncologyPeer-reviewedDec 11, 2024

Whole exome-seq and RNA-seq data reveal unique neoantigen profiles in Kenyan breast cancer patients

Godfrey Wagutu, John Gitau, Kennedy Wanjau Mwangi…·Francis Makokha

The paper identifies unique neoantigen profiles in Kenyan breast cancer patients using whole exome and RNA sequencing data, highlighting patient-specific mutations and HLA associations.

3 citations

humanwhole-exome sequencing

𝕏 PostBluesky