Author

Dmitry Ershov

Institut PasteurORCID 0000-0002-1254-3307Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:imaging· 2 Approach:machine learning (classical)· 2 Organism:bacteria (other)· 1 Approach:deep learning· 1 Research Focus:host-pathogen & immune response· 1 Organism:mouse· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Jean-Yves TinéveziD· 2 shared Arthur Charles‐OrszagiD· 1 shared Carmen BuchrieseriD· 1 shared Daria BonazziiD· 1 shared Francisco Javier García-RodrígueziD· 1 shared Guillaume DuméniliD· 1 shared Guillaume JacquemetiD· 1 shared James R. W. ConwayiD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersMicrobiology

Jean-Yves TinévezORCID

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2 papers

Recent·Most cited

MicrobiologyNature CommunicationsPeer-reviewedOct 16, 2025

Backtracking Metabolic Dynamics in Single Cells Predicts Bacterial Replication in Human Macrophages

Mariatou Dramé, Francisco Javier García-Rodríguez, Dmitry Ershov…·Pedro Escoll

The paper tracks metabolic dynamics in single human macrophages infected with Legionella pneumophila to predict bacterial replication with 83% accuracy using machine learning.

7 citations

humanimaging

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BioinformaticsbioRxivPreprintSep 3, 2021

✦ In-depth digest

Bringing TrackMate into the era of machine-learning and deep-learning.

Dmitry Ershov, Minh-Son Phan, Joanna W. Pylvänäinen…·Jean-Yves Tinévez

Rewritten Fiji plugin TrackMate now uses StarDist, ilastik, Weka, MorphoLibJ or imported label images as detectors, stores 2D object contours, and tracks shape and intensity over time.

92 citations

humanmouse

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