Leila Taher

The paper characterizes ~700,000 conserved noncoding elements in the human genome, showing many have cis-regulatory potential and are enriched in TAD centers.

ENT3C measures similarity between Hi-C and micro-C contact matrices using entropy-based complexity changes in diagonal regions.

The paper shows that ignoring multimappers in NGS data leads to biases in functional analysis, particularly affecting transposons and repetitive gene families.

The paper identifies enhancers in Tribolium that regulate wavelike gene expression patterns by distinguishing dynamic and static enhancers.

The paper introduces DNA-DDA, a sequence-based method predicting genome-wide A and B compartments using chaos theory, validated across four cell types with 20 Mb sequences.

The paper identifies transposon exaptation as a common mechanism for shadow enhancer evolution in mammals, showing that a significant proportion of shadow enhancer pairs originate from transposons.

The paper integrates multi-omics data to analyze gene expression dynamics in mouse embryos, revealing discrepancies between transcript and protein levels during early development.

The paper identifies regulatory elements and transcription factors involved in GABAergic and cholinergic neuron fate maturation during MGE development.