Johan Bengtsson‐Palme

This study analyzes microbial community changes in traditional Swiss cheese over 142 years, showing shifts linked to production practices and antibiotic use.

The paper compares ARG detection pipelines and finds large discrepancies in reported ARG counts and composition across different habitats.

This study develops a gastric microbial model community to investigate H. pylori interactions with other microbes and their impact on pathogenesis.

This study characterizes the structural and functional dynamics of milk oligosaccharides in Atlantic grey seals throughout lactation, revealing complexity comparable to human milk.

This study identifies cefiderocol resistance genes in environmental samples using functional metagenomics, revealing beta-lactamases and mobile genetic elements.

The paper investigates how the prevalence of antibiotic resistance genes in human gut and wastewater microbiomes correlates with their dissemination among bacterial pathogens.

This study finds that fish are not effective sentinels for detecting AMR pollution from wastewater treatment plants, as their resistomes do not reflect increases in ARGs in river water and sediment.

This study examines the roles of dinB and katE in E. coli adaptation to amoxicillin, finding that while both genes are involved, their contributions to beta-lactam resistance are distinct.

This study examines resistance development to four fluoroquinolones in E. coli, showing varying dependence on the SOS response and distinct mutation profiles.

The paper evaluates metagenomic assembly tools' ability to recover antibiotic resistance gene (ARG) genomic contexts, finding that Trinity performs better than metaSPAdes and MEGAHIT in reconstructing accurate ARG-containing contigs.

The paper identifies that under-annotation of mitochondrial rRNA sequences in microbiome studies leads to biased results and proposes improving taxonomies to better annotate these sequences.

The paper introduces a tool called Mumame to detect and quantify point mutations in shotgun metagenomic data, showing that sequencing depth is critical for detecting rare mutations.

The paper introduces ribosomal tandem repeat barcoding for fungi to generate comprehensive reference data using third-generation sequencing.

The paper updates Metaxa2 to support taxonomic classification using any genetic marker for metagenomic and metabarcoding data.