Author

José Bento Sterman Ferraz

Universidade de São PauloORCID 0000-0002-3874-3104Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 4 Approach:statistical model· 4 Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 2 Organism:bacteria (other)· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Flávio Vieira MeirellesiD· 3 shared Ricardo Perecin NocitiiD· 3 shared Dewison Ricardo AmbriziiD· 2 shared E. C. MattosiD· 2 shared Felipe PereciniD· 2 shared Jacinthe TherrieniD· 2 shared João Vitor Puttini PaixãoiD· 2 shared Juliano Coelho da SilveiraiD· 2 shared

Activity by Year

2019-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Flávio Vieira MeirellesORCID

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4 papers

Recent·Most cited

An exploratory data analysis from ovine and bovine RNA-seq identifies pathways and key genes related to cervical dilatation

Joedson Dantas Gonçalves, José Bento Sterman Ferraz, Flávio Vieira Meirelles, Ricardo Perecin Nociti, Maria Emília Franco Oliveira

The paper analyzes RNA-seq data from cattle and sheep to identify genes and pathways associated with cervical dilatation during reproductive cycles.

Animals · Jun 21, 2023Peer-reviewedGenomics

Assessment of Total Oocyte Transcripts Representation through Single Ooplasm Biopsy in Bovine with High Reliability

Dewison Ricardo Ambrizi, Ricardo Perecin Nociti, Tiago Henrique Camara De, João Vitor Puttini Paixão, Jacinthe Therrien, E. C. Mattos, José Bento Sterman Ferraz, Marcos Roberto Chiaratti, Juliano Rodrigues Sangalli, Juliano Coelho da Silveira, Felipe Perecin, Lawrence Charles Smith, Flávio Vieira Meirelles

This study validates a single oocyte biopsy method in bovine by comparing it to whole oocytes, showing high correlation in gene expression despite minor differences.

bioRxiv · Apr 24, 2023 · PreprintBioinformatics

Retrospective model utilizing biopsies, granulosa cells, and polar body to predict oocyte competence in bovine

Dewison Ricardo Ambrizi, Tiago Henrique Camara De, Ricardo Perecin Nociti, João Vitor Puttini Paixão, Marcos Roberto Chiaratti, Juliano Rodrigues Sangalli, Juliano Coelho da Silveira, Felipe Perecin, E. C. Mattos, José Bento Sterman Ferraz, Jacinthe Therrien, Lawrence Charles Smith, Flávio Vieira Meirelles

This paper predicts oocyte competence in bovine using RNA-seq and WGBS from biopsies, cumulus cells, granulosa cells, and polar bodies, identifying transcriptional and epigenetic differences between cleaved but arrested and blastocyst-stage embryos.

bioRxiv · Apr 23, 2023 · PreprintGenomics

Systems biology reveals NR2F6 and TGFB1 as key regulators of feed efficiency in beef cattle

Pâmela A. Alexandre, Marina Naval-Sánchez, Laercio R. Porto Neto, José Bento Sterman Ferraz, Antônio Reverter, Heidge Fukumasu

The paper identifies NR2F6 and TGFB1 as key regulators of feed efficiency in beef cattle using systems biology approaches and validates their roles in hepatic inflammation and muscle development.

Frontiers in Genetics · Mar 22, 2019Peer-reviewedSystems Biology