Author

Srijit Mukherjee

Stanford UniversityORCID 0000-0002-6439-9802Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Assay:protein structure· 2 Organism:C. elegans· 1 Research Focus:cell type annotation· 1 Research Focus:drug response / drug discovery· 1 Organism:E. coli· 1 Assay:fluorescence / live-cell microscopy· 1 Assay:imaging· 1

Frequent Co-Authors

Alice R. WalkeriD· 2 shared Irimpan I. MathewsiD· 2 shared Nahal BagheriiD· 2 shared Premashis MannaiD· 2 shared Steven G. BoxeriD· 2 shared Alec F. CondoniD· 1 shared Andrew G. York· 1 shared Anita Adams· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersBiophysics

Alice R. WalkerORCID

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4 papers

Recent·Most cited

mCranberry: A rationally engineered monomeric red fluorescent protein with 85% quantum yield

Shivam Chaubey, Srijit Mukherjee, Anita Adams, Alice R. Walker, Melonnie L M Furgason, Heman Kumar Ramiya Ramesh Babu, Irimpan I. Mathews, Premashis Manna

The paper introduces mCranberry, a bright monomeric red fluorescent protein with 85% quantum yield, engineered through surface-mutation-guided strategies.

bioRxiv · Oct 8, 2026 · PreprintBiophysics

Dark state-mediated photobleaching in mCherry-basedred fluorescent proteins

Premashis Manna, Mark A. Hix, Srijit Mukherjee, Alice R. Walker, Ralph Jimenez

This study investigates dark state-mediated photobleaching in mCherry-based RFPs, showing photodestructive dark states and providing insights for engineering brighter and more photostable probes.

The Journal of Physical Chemistry Letters · Mar 16, 2026Peer-reviewedBiophysics

Covalent Drug binding in Live Cells Monitored by Mid-IR Quantum Cascade Laser Spectroscopy: Photoactive Yellow Protein as a Model System

Srijit Mukherjee, Steven D.E. Fried, Nathalie Y. Hong, Nahal Bagheri, Jacek Kozuch, Irimpan I. Mathews, Jacob M. Kirsh, Steven G. Boxer

This paper develops a mid-IR quantum cascade laser spectroscopy method to detect drug-target interactions in live cells using photoactive yellow protein as a model system.

bioRxiv · Aug 15, 2025 · PreprintBiophysics

Magnetic resonance control of reaction yields through genetically-encoded protein:flavin spin-correlated radicals in a live animal

S. C. Burd, Nahal Bagheri, Maria Ingaramo, Alec F. Condon, Samsuzzoha Mondal, Dara P. Dowlatshahi, Jacob A. Summers, Srijit Mukherjee, Andrew G. York, Soichi Wakatsuki A, Steven G. Boxer, Mark A. Kasevich

The paper shows RF magnetic fields can influence RFP-flavin radical pair reactions in C. elegans, suggesting quantum effects in living systems.

bioRxiv · Feb 27, 2025 · PreprintBiophysics