Author

Shoufang Qu

National Institutes for Food and Drug ControlORCID 0000-0002-7202-7160Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:statistical model· 3 Research Focus:benchmarking· 2 Assay:long-read sequencing· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Jie HuangiD· 4 shared Chuanfeng HuangiD· 2 shared Guangyi FaniD· 2 shared Jiezhong ZhangiD· 2 shared Sanyang LiuiD· 2 shared Wenxin ZhangiD· 2 shared Xinming LiangiD· 2 shared Anna Zhu· 1 shared

Activity by Year

2020-2021 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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4 shared papersGenomics

Jie HuangORCID

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Author profile →

4 papers

Recent·Most cited

Robust Benchmark Structural Variant Calls of An Asian Using the State-of-Art Long Fragment Sequencing Technologies

Xiao Du, Lili Li, Fan Liang, Sanyang Liu, Wenxin Zhang, Shuai Sun, Yuhui Sun, Fei Fan, Linying Wang, Xinming Liang, Weijin Qiu, Guangyi Fan, Ou Wang, Weifei Yang, Jiezhong Zhang, , Jie Huang

The paper establishes high-confidence structural variant calls in an Asian individual using long-read sequencing technologies and validates them through PCR and Sanger sequencing.

Genomics Proteomics & Bioinformatics · Mar 1, 2021Peer-reviewedGenomics

BDdb: a comprehensive platform for exploration and utilization of birth defect multi-omics data

Dengwei Zhang, Hai‐Xi Sun, Ziheng Zhou, Xiaosen Jiang, Dongsheng Chen, Si Zhou, Jie Huang, Shoufang Qu, Ying Gu, Xiuqing Zhang, Xin Jin, Ya Ming Gao, Yue Shen, Fang Chen

BDdb is a database integrating multi-omics data, cfDNA data, and biomarkers for birth defects, enabling data exploration and analysis for research and clinical applications.

bioRxiv · Jul 20, 2020 · PreprintBioinformatics

An integrated Asian human SNV and indel benchmark combining multiple sequencing methods

Chuanfeng Huang, Libin Shao, Shoufang Qu, Junhua Rao, Tao Cheng, Zhisheng Cao, Sanyang Liu, Jie Hu, Xinming Liang, Ling Shang, Yangyi Chen, Zhikun Liang, Jiezhong Zhang, Peipei Chen, Donghong Luo, , Jie Huang

The paper constructs a high-confidence Asian variant benchmark using multiple sequencing methods and identifies novel variants in challenging regions.

Scientific Reports · Jun 17, 2020Peer-reviewedGenomics

Development of a Genomic DNA Reference Material Panel for Thalassemia Genetic Testing

Zhenzhen Yin, Shoufang Qu, Chuanfeng Huang, Fang Chen, Jianbiao Li, Shiping Chen, Jingyu Ye, Ying Yang, Yu Zheng, Xi Zhang, Xuexi Yang, Long-Xu Xie, Jitao Wei, Fengxiang Wei, Jian Guo, Jie Huang

The paper develops a national panel of 31 genomic DNA reference materials for thalassemia genetic testing, validated across multiple laboratories and stable under various conditions.

International Journal of Laboratory Hematology · Apr 16, 2020Peer-reviewedGenetics