Judit Planas

Modeling and Simulation of Rat Non-Barrel Somatosensory Cortex. Part I: Modeling Anatomy

The paper creates a detailed computational model of rat somatosensory cortex anatomy, including 4.2 million neurons and 14.2 billion synapses, and identifies limitations in connectivity prediction from morphology.

Modeling and Simulation of Neocortical Micro- and Mesocircuitry. Part II: Physiology and Experimentation

The paper presents a large-scale biophysically detailed model of somatosensory cortex to simulate and validate cortical dynamics and experimental results.

Community-based Reconstruction and Simulation of a Full-scale Model of Region CA1 of Rat Hippocampus

The paper presents a full-scale in silico model of rat hippocampal CA1 integrating diverse experimental data and validates it through simulations of theta rhythm and other experiments.

Synthesis of geometrically realistic and watertight neuronal ultrastructure manifolds for in silico modeling

The paper develops a method to generate geometrically realistic and watertight neuronal manifolds from morphological data for in silico simulations.

The SONATA Data Format for Efficient Description of Large-Scale Network Models

The paper introduces the SONATA data format to efficiently describe large-scale network models in neuroscience, enabling model construction, simulation, and sharing.