Author

Amit Gupta

UConn HealthORCID 0000-0002-8395-1201Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Amit Gupta1 paper · Cleveland Clinic

Biology Disciplines

Click to filter author papers

Molecular Biology· 2 Cell Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Organism:zebrafish· 2 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1 Organism:mouse· 1 Research Focus:protein folding & dynamics· 1 Assay:proteomics· 1

Frequent Co-Authors

Jean-Denis BeaudoiniD· 3 shared Ethan C. StrayeriD· 2 shared A.P. TurnbulliD· 1 shared Adrianna DąbrowskaiD· 1 shared Allyson M. Voelker· 1 shared Anna Z StrubaiD· 1 shared Antonio J. GiráldeziD· 1 shared Camila Pasquali· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersMolecular Biology

Jean-Denis BeaudoinORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

NaP-TRAP: A versatile and accessible workflow to dissect principles of translational regulation and mRNA stability

Amit Gupta, Anna Z Struba, Srihari Madhavan, Ethan C. Strayer, Jean-Denis Beaudoin

NaP-TRAP measures translation and mRNA abundance to study cis-regulatory elements in mRNA stability and translation.

Current Protocols · Jul 1, 2026Peer-reviewedMolecular Biology

The differential mechanisms of eIF4A1-mediated translational activation instructed by distinct RNA features

Tobias Schmidt, A.P. Turnbull, Amit Gupta, Joseph A. Waldron, Katie Pollock, June Munro, Ridvan Nepravishta, Pauline Herviou, Adrianna Dąbrowska, Kelly Hodge, Allyson M. Voelker, Leon Pang, Camila Pasquali, Georgios Kanellos, Sara R. Zanivan, , Martin Bushell

This study identifies how eIF4A1 differentially activates translation based on mRNA features, revealing distinct mechanisms for mRNA selection and inhibition by eFT226 and hippuristanol.

bioRxiv · Mar 24, 2025 · PreprintCell Biology

NaP-TRAP, a novel massively parallel reporter assay to quantify translation control.

Ethan C. Strayer, Srikar Krishna Gopinath, Haejeong Lee, Charles E. Vejnar, Nils Neuenkirchen, Amit Gupta, Jean-Denis Beaudoin, Antonio J. Giráldez

The paper introduces NaP-TRAP, a new MPRA method to measure mRNA translation, and uses it to analyze cis-regulatory elements in zebrafish and human cells.

Nature Communications · Dec 30, 2024Peer-reviewedMolecular Biology

Abundance and diversity of phages, microbial taxa and antibiotic resistance genes in the sediments of the river Ganges through metagenomic approach

Narender Kumar, Amit Gupta, Sarabjeet Kour Sudan, Deepika Pal, Vinay Randhawa, Girish Sahni, Shanmugam Mayilraj, Manoj Kumar

The paper analyzes metagenomic data from river Ganges sediments to identify phages, microbial taxa, and antibiotic resistance genes, revealing their abundance and diversity.

Microbial Drug Resistance · Apr 29, 2021Peer-reviewedGenomics