Author

Qiqi Cao

The University of Texas Southwestern Medical CenterORCID 0000-0002-9042-563XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Genetics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Organism:human· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Research Focus:spatial domain detection· 2 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

Haiqi CheniD· 2 shared Qianlan XuiD· 2 shared Shreya Rajachandran· 2 shared Xin ZhangiD· 2 shared Biao ZhangiD· 1 shared Bin SuiD· 1 shared Bin ZouiD· 1 shared Bing SuiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersGenetics

Haiqi ChenORCID

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3 papers

Recent·Most cited

ECHOS enables spatial epigenome profiling at subcellular resolution

Qiqi Cao, Qianlan Xu, Yusuke Ueda, Shreya Rajachandran, Manjita Sharma, Xin Zhang, Mala Mahendroo, Edward J. Grow, Haiqi Chen

ECHOS enables spatial epigenome profiling at subcellular resolution by combining high-resolution imaging and high-throughput sequencing, revealing distinct gene regulatory logics and epigenetic changes in human tissues.

bioRxiv · Mar 27, 2026 · PreprintGenetics

Subcellular Level Spatial Transcriptomics with PHOTON

Shreya Rajachandran, Qianlan Xu, Qiqi Cao, Xin Zhang, Fei Chen, Sarah M. Mangiameli, Haiqi Chen

PHOTON captures subcellular RNA localization using imaging and sequencing, revealing m6A's role in stress granule mRNA partitioning.

Nature Communications · May 14, 2025Peer-reviewedGenomics

Large-scale single-cell analysis reveals critical immune characteristics of COVID-19 patients

Xianwen Ren, Wen Wen, Xiaoying Fan, Wenhong Hou, Bin Su, Pengfei Cai, Jiesheng Li, Yang Liu, Fei Tang, Fan Zhang, Yu Yang, Jiangping He, Wenji Ma, Jingjing He, Pingping Wang, , Zemin Zhang

This study uses single-cell RNA sequencing to analyze immune responses in COVID-19 patients, identifying key immune cell changes and molecular pathways linked to disease severity.

bioRxiv · Oct 29, 2020 · PreprintGenomics