Garth D. Ehrlich

The paper identifies disease-specific alleles and gene duplications in H. influenzae by analyzing protein sequences and clinical metadata from 1,600 genomes.

The paper develops a long-read Hi-C method to study 3D interactions between integrated HBV DNA and host genomes, improving sensitivity and specificity for analyzing these interactions.

This study identifies coding and non-coding small RNAs in Bacteroides fragilis outer membrane vesicles that modulate inflammatory responses in intestinal epithelial cells, with ETBF OMVs showing immunosuppressive effects.

The paper presents a pipeline using PacBio CCS to sequence full-length 16S rRNA genes for species-level microbiome analysis, showing high accuracy in mock communities and variation in sinonasal microbiomes.

This study identifies a microbiome-TP53 interaction in squamous cell lung cancer, showing Acidovorax enrichment in smokers with TP53 mutations.