Author

Sergey V. Balashov

Drexel University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1

Frequent Co-Authors

Garth D. EhrlichiD· 3 shared Joshua P. EarliD· 3 shared Archana S. Bhat· 2 shared Jocelyn A. Hammond· 2 shared Joshua Chang MelliD· 2 shared Rachel L. Ehrlich· 2 shared Alan D. WorkmaniD· 1 shared Alex Valm· 1 shared

Activity by Year

2018-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersGenomics

Garth D. EhrlichORCID

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Author profile →

3 papers

Recent·Most cited

Identification of disease-specific alleles and gene duplications from 1,600 Haemophilus influenzae genomes using predicted protein analyses from an unsupervised language model and clinical metadata

Phillip R Palmer, Joshua P. Earl, Joshua Chang Mell, Kelvin L. Koser, Jocelyn A. Hammond, Rachel L. Ehrlich, Sergey V. Balashov, Azad Ahmed, Steven Lang, Kevin M. Raible, Angelina L Wang, Brian L. Wigdahl, Ravinder Kaur, Michael E. Pichichero, Will Dampier, Garth D. Ehrlich

The paper identifies disease-specific alleles and gene duplications in H. influenzae by analyzing protein sequences and clinical metadata from 1,600 genomes.

bioRxiv · Mar 15, 2026 · PreprintGenomics

Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes

Joshua P. Earl, Nithin D. Adappa, Jarosław E. Król, Archana S. Bhat, Sergey V. Balashov, Rachel L. Ehrlich, James N. Palmer, Alan D. Workman, Mariel T. Blasetti, Bhaswati Sen, Jocelyn A. Hammond, Noam A. Cohen, Garth D. Ehrlich, Joshua Chang Mell

The paper presents a pipeline using PacBio CCS to sequence full-length 16S rRNA genes for species-level microbiome analysis, showing high accuracy in mock communities and variation in sinonasal microbiomes.

Microbiome · Oct 23, 2018Peer-reviewedBioinformatics

Microbiome-TP53 Gene Interaction in Human Lung Cancer

K. Leigh Greathouse, James R. White, Ashely J. Vargas, Valery V. Bliskovsky, Jessica A. Beck, Natalia von Muhlinen, Eric C. Polley, Elise D. Bowman, Mohammed A. Khan, Ana I. Robles, Tomer Cooks, Bríd M. Ryan, Amiran H. Dzutsev, Giorgio Trinchieri, Marbin A. Pineda, , Curtis C. Harris

This study identifies a microbiome-TP53 interaction in squamous cell lung cancer, showing Acidovorax enrichment in smokers with TP53 mutations.

bioRxiv · Feb 28, 2018 · PreprintCancer Biology