Author

Ramin Basir

University of PennsylvaniaORCID 0000-0003-2590-9934Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:chromatin & epigenetic regulation· 2 Approach:deep learning· 2 Assay:imaging· 2 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Vivek B. ShenoyiD· 3 shared Joshua M. TothiD· 2 shared Melike LakadamyaliiD· 2 shared Vinayak VinayakiD· 2 shared Aayush KantiD· 1 shared Anuja JaganathaniD· 1 shared Cynthia A. Reinhart‐KingiD· 1 shared Laurent PieuchotiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersBiophysics

Vivek B. ShenoyORCID

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3 papers

Recent·Most cited

BiophysicsActa BiomaterialiaPeer-reviewedJun 26, 2026

Mechanical regulation of cellular energy metabolism in cancer microenvironments

Joshua M. Toth, Anuja Jaganathan, Ramin Basir…·Vivek B. Shenoy

The paper develops a model linking matrix stiffness and ligand density to cellular bioenergetics in cancer cells, showing how mechanical forces influence metabolic pathways and contractility.

3 citations

humanbulk RNA-seq

𝕏 PostBluesky

BiophysicsNature CommunicationsPeer-reviewedAug 25, 2025

Revealing the Biophysics of Lamina-Associated Domain Formation by Integrating Theoretical Modeling and High-Resolution Imaging

Monika Dhankhar, Zixian Guo, Aayush Kant…·Vivek B. Shenoy

This study combines theoretical modeling and high-resolution imaging to reveal how chromatin-lamina interactions and environmental cues influence LAD formation and thickness in hMSCs.

20 citationstop 3%

humanimaging

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BiophysicsNature CommunicationsPeer-reviewedApr 23, 2025

Polymer Model Integrates Super-Resolution Imaging and Epigenomic Sequencing to Elucidate the Role of Epigenetic Reactions in Shaping 4D Chromatin Organization

Vinayak Vinayak, Ramin Basir, Rosela Golloshi…·Vivek B. Shenoy

The paper develops a polymer model integrating super-resolution imaging and epigenomic sequencing to show how epigenetic reactions shape 4D chromatin organization and influence gene expression and metastatic potential.

9 citations

humanHi-C

𝕏 PostBluesky