Author

R. Ranjith Kumar

Centre National de la Recherche ScientifiqueORCID 0000-0003-2809-948XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biochemistry· 1 Microbiology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:drug response / drug discovery· 2 Assay:metagenomics· 2 Organism:mouse· 2 Assay:proteomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Allison M BarryiD· 1 shared Amit ChatterjeeiD· 1 shared Bin MaiD· 1 shared Christoph KrispiD· 1 shared David Gómez‐VarelaiD· 1 shared Debashis SahooiD· 1 shared Dirk HalleriD· 1 shared Doriane AguannoiD· 1 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperMicrobiology

Allison M BarryORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologyNature CommunicationsPeer-reviewedJul 18, 2025

Ultra-sensitivity metaproteomics redefines the gut dark metaproteome, uncovering host-microbiome interactions and drug targets in intestinal inflammatory diseases.

Feng Xian, Malena Brenek, Christoph Krisp…·David Gómez‐Varela

The paper introduces uMetaP, an ultra-sensitive metaproteomic method that enhances detection of the gut dark metaproteome and identifies drug targets in intestinal inflammatory diseases.

36 citationstop 1%

mousemetagenomics

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BiochemistryLab on a ChipPeer-reviewedJan 1, 2025

A single microfluidic device for multi-omics analysis sample preparation

R. Ranjith Kumar, Iman Haddad, Massamba Mbacke Ndiaye…·Yann Verdier

The paper develops a microfluidic device for simultaneous proteomic and genomic analysis of microbial samples, showing it can process low-abundant samples with reduced bias.

1 citation

E. colimouse

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Systems BiologybioRxivPreprintFeb 17, 2021

Invariant Differential Expression Analysis Reveals Mechanism of Cancer Resistance to Cell Cycle Inhibitors

Amit Chatterjee, Sonalisa Pandey, Ravikanth Danda…·Debashis Sahoo

The paper introduces iDEA, a method to improve differential expression analysis in cancer, revealing mechanisms of resistance to cell cycle inhibitors in retinoblastoma.

DOI 10.1101/2021.02.17.431607

humanbulk RNA-seq

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