Author

Daniel Desirò

Friedrich Schiller University JenaORCID 0000-0003-3928-9094Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Biophysics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:proteomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Manja MarziD· 2 shared Martin HölzeriD· 2 shared Alexander BorodavkaiD· 1 shared Alice ColyeriD· 1 shared Andreas SchoeniD· 1 shared Anne-Kathrin Liebschner· 1 shared Antonio N. CalabreseiD· 1 shared Astrid BetheiD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 11 mutual co-author links

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2 shared papersBioinformatics

Manja MarzORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

MicrobiologybioRxivPreprintMar 2, 2026

Bridging disciplines towards wastewater-based surveillance of antimicrobial resistance: frequency, local dynamics, and genomic characteristics of carbapenemase-producing Klebsiella pneumoniae

Katharina A. Werner, Vladimir Bajić, Christian Blumenscheit…·Birgit Walther

This paper develops a workflow for detecting carbapenemase-producing Klebsiella pneumoniae in wastewater using wet-lab methods and genomics, finding high prevalence and specific genetic markers.

DOI 10.64898/2026.03.02.707721

humanmetagenomics

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BiophysicsbioRxivPreprintMay 24, 2025

Phosphorylation enables allosteric control of a viral condensate

Julia Acker, Xinyu Wang, Daniel Desirò…·Alexander Borodavka

This study shows that phosphorylation enables distinct nucleation mechanisms for NSP5 condensate formation in rotaviruses, depending on strain-specific LLPS propensity.

4 citations

proteomicsmachine learning (classical)

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BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedSep 30, 2019

A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes

Nelly Mostajo, Marie Lataretu, Sebastian Krautwurst…·Martin Hölzer

The paper annotates and analyzes non-coding RNAs in 16 bat genomes, revealing new expression patterns and providing a resource for studying bat biology and host-virus interactions.

7 citations

multiple speciesbulk RNA-seq

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BioinformaticsVirus ResearchPeer-reviewedNov 12, 2018

SilentMutations (SIM): a tool for analyzing long-range RNA-RNA interactions in viral genomes and structured RNAs

Daniel Desirò, Martin Hölzer, Bashar Ibrahim, Manja Marz

SilentMutations (SIM) analyzes the effect of mutations on long-range RNA-RNA interactions in viral genomes, predicting disruptive and compensatory mutants.

6 citations

viruslong-read sequencing

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