Author

Dennis John Kuo

University of California San DiegoORCID 0000-0003-4154-0057Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Cancer Biology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 3 Research Focus:differential expression· 3 Organism:human· 3 Approach:statistical model· 3 Research Focus:gene regulatory network inference· 2 Assay:ATAC-seq· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

Linda Luo· 2 shared Arko SeniD· 1 shared Chae Yun ChoiD· 1 shared Charles-Alexandre Roy· 1 shared Clement Richard BolandiD· 1 shared Daniella T. VoiD· 1 shared David T. TeacheyiD· 1 shared Debashis SahooiD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersCancer Biology

Linda Luo

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Cancer BiologybioRxivPreprintDec 6, 2025

Widespread remodeling of the RNA editome underlies transcriptional and clinical heterogeneity in pediatric acute lymphoblastic leukemia

Sara Brin Rosenthal, Thomas C. Whisenant, Roman Šášik…·Qingfei Jiang

The paper identifies widespread RNA editing changes in pediatric ALL, linking them to clinical outcomes and potential therapeutic targets.

DOI 10.64898/2025.12.03.692208

humanbulk RNA-seq

𝕏 PostBluesky

Cancer BiologybioRxivPreprintOct 4, 2024

Heterogeneity in chromatin structure drives core regulatory pathways in B-cell Acute Lymphoblastic Leukemia

Arko Sen, Zhichao Xu, Sélène T. Tyndale…·Jesse R. Dixon

This study identifies how chromatin structure heterogeneity in B-ALL correlates with transcriptional subtypes and developmental stages, revealing its role in disease progression.

2 citations

humanbulk RNA-seq

𝕏 PostBluesky

MicrobiologybioRxivPreprintMay 26, 2024

Molecular Signatures for Microbe-Associated Colorectal Cancers

Ibrahim M. Sayed, Daniella T. Vo, Joshua A. Alcantara…·Soumita Das

The paper identifies a Microbe-Associated Colorectal Cancer Signature (MACS) induced by Fusobacterium nucleatum in genetically predisposed hosts, linking microbial infection to early CRC initiation.

3 citations

humanbulk RNA-seq

𝕏 PostBluesky