Exclusion from DNA double-strand breaks is a pervasive feature of the hnRNP family
Estelle VincendeauiD, Leonie von Ondarza, Julie KlariciD, Nikhil VenkateshiD, Carmine Ceraolo, Stephanie PanieriD
Abstract
Heterogeneous nuclear ribonucleoproteins (hnRNPs) are abundant RNA-binding proteins that have been linked individually to the DNA double-strand break (DSB) response, but their behaviour at damaged chromatin has only been examined one protein at a time and under disparate conditions. Here, we compare the core hnRNP family side by side by laser microirradiation and live-cell imaging. We find that 13 of 14 members are excluded from damaged chromatin, 10 directly and 3 after a transient phase of recruitment, establishing exclusion rather than accumulation as the predominant behaviour of this family. We characterised this behaviour in detail for hnRNPH1, which has not previously been linked directly to the DSB response. Its exclusion is sustained for several hours and also occurs at nuclease-induced breaks at a defined genomic locus. Importantly, exclusion is independent of the signalling pathways that drive protein recruitment to breaks and of transcriptional elongation, and instead requires the GYR low-complexity domain, with RNA binding contributing redundantly through three quasi-RNA recognition motifs. Finally, tethering hnRNPH1 to breaks through the RNF8 FHA domain selectively impairs 53BP1 accumulation without affecting {gamma}-H2AX, MDC1 or RPA, and hnRNPH1 is excluded from 53BP1 nuclear bodies in unchallenged cells. Together, these findings establish protein exclusion as an active component of the DSB response and show that the presence of an hnRNP at damaged chromatin can determine which repair factors assemble at DNA break sites.
02 /Specification & Classification
Click any tag to browse matching papers- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A role for RNA and DNA:RNA hybrids in the modulation of DNA repair by homologous recombination
Giuseppina D’Alessandro, Marek Adamowicz, … Fabrizio d’Adda di Fagagna·bioRxiv·Jan 29, 2018
- Nucleolar detention of NONO shields DNA double-strand breaks from aberrant transcripts
Barbara Trifault, Victoria Mamontova, … Kaspar Burger·Nucleic Acids ResearchPeer-reviewed·Jan 4, 2024
- Dna2 nuclease resolves RNA:DNA hybrids at double-strand breaks
Aditya Mojumdar, Courtney Granger, … Jennifer A. Cobb·iSciencePeer-reviewed·Jul 30, 2025
- CtIP-dependent nascent RNA expression flanking DNA breaks guides the choice of DNA repair pathway
Daniel Gómez-Cabello, George Pappas, … Jiří Bártek·Nature CommunicationsPeer-reviewed·Sep 9, 2022
- RNA Polymerase II-mediated transcription is required for repair of ribosomal DNA breaks in nucleolar caps, guarding against genomic instability
Cintia Checa-Rodríguez, Beatriz Suárez-Quintero, … Daniel Gómez-Cabello·bioRxiv·Oct 20, 2023
- HP1α-driven Phase Separation and Repair Pathway Choice in Response to Heterochromatin Damage
Darshika Bohra, Aprotim Mazumder·The Journal of Cell BiologyPeer-reviewed·Dec 6, 2025