Frontiers in ImmunologyBioinformaticsPeer-reviewed journal article
CXCL4 links inflammation and fibrosis through transcriptional and epigenetic reprogramming of monocyte-derived cells
Sandra C. Silva‐CardosoiD, Weiyang TaoiD, Chiara AngiolilliiD, Ana P. LopesiD, Cornelis P. J. BekkeriD, Abhinandan Devaprasad, Barbara GiovannoneiD, Jacob M. van LaariD, Marta Cossu, Wioleta MarutiD, Erik HackiD, Rob J. de BoeriD, Marianne L. BoesiD, Timothy R. D. J. RadstakeiD, Aridaman PanditiD
Abstract
Fibrosis is a condition shared by numerous inflammatory diseases. Our incomplete understanding of the molecular mechanisms underlying fibrosis has severely hampered effective drug development. CXCL4 is associated with the onset and extent of fibrosis development in systemic sclerosis, a prototypic inflammatory and fibrotic disease. Here, we integrated 65 paired longitudinal transcriptional and methylation profiles from monocyte-derived cells with/without CXCL4 exposure. Using data-driven gene regulatory network analyses, we demonstrate that CXCL4 dramatically alters the trajectory of monocyte differentiation, inducing a novel pro-inflammatory and pro-fibrotic phenotype mediated via key transcriptional regulators including CIITA. CXCL4 exposed monocyte-derived cells directly trigger a fibrotic cascade by producing ECM molecules and inducing myofibroblast differentiation. Inhibition of CIITA mimicked CXCL4 in inducing a pro-inflammatory and pro-fibrotic phenotype, validating the relevance of the gene regulatory network. Our study unveils CXCL4 as a key secreted factor driving innate immune training and forming the long-sought link between inflammation and fibrosis.
- organism: human
- assay: bulk RNA-seq
- assay: DNA methylation
- research focus: gene regulatory network inference
- approach: statistical model
- Citations
- 56
- FWCI
- 2.89
- Field percentile
- top 7%
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