Side-Chain Dynamics of the α1B-Adrenergic Receptor determined by NMR via Methyl Relaxation
C. Baumann, W.-C. Chiang, R. Valsecchi, S. Jurt, M. Deluigi, M. Schuster, A. Plueckthun, O. Zerbe
Abstract
G protein-coupled receptors (GPCRs) are medically important membrane proteins that sample inactive, intermediate, and active conformational states characterized by relatively slow interconversions ([~]s- ms). On a faster timescale ([~]ps-ns), the conformational landscape of GPCRs is governed by the rapid dynamics of amino acid side chains. Such dynamics are essential for protein functions such as ligand recognition and allostery. Unfortunately, technical challenges have almost entirely precluded the study of side-chain dynamics for GPCRs. Here, we investigate the rapid side-chain dynamics of a thermostabilized 1B-adrenergic receptor (1B-AR) as probed by methyl relaxation. We determined order parameters for Ile, Leu, and Val methyl groups in the presence of inverse agonists that bind orthosterically (prazosin, tamsulosin) or allosterically (conopeptide {rho}-TIA). Despite the differences in the ligands, the receptors overall side-chain dynamics are very similar, including those of the apo form. However, {rho}-TIA increases the flexibility of Ile1764x56 and possibly of Ile2145x49, adjacent to Pro2155x50 of the highly conserved P5x50I3x40F6x44 motif crucial for receptor activation, suggesting differences in the mechanisms for orthosteric and allosteric receptor inactivation. Overall, increased Ile side-chain rigidity was found for residues closer to the center of the membrane bilayer, correlating with denser packing and lower protein surface exposure. In contrast to two microbial membrane proteins, in 1B-AR Leu exhibited higher flexibility than Ile side chains on average, correlating with the presence of Leu in less densely packed areas and with higher protein-surface exposure than Ile. Our findings demonstrate the feasibility of studying receptor-wide side-chain dynamics in GPCRs to gain functional insights.
02 /Specification & Classification
Click any tag to browse matching papers- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- α1A-adrenoceptor inverse agonists and agonists modulate receptor signalling through a conformational selection mechanism
P. R. Gooley, F. Wu, … D. J. Scott·bioRxiv·Dec 7, 2019
- Ligand-induced conformational changes in the β1-Adrenergic Receptor Revealed by Hydrogen-Deuterium Exchange Mass Spectrometry
Joanna Toporowska, Parth Kapoor, … Argyris Politis·Nature CommunicationsPeer-reviewed·Oct 18, 2024
- Visualizing the M2 muscarinic acetylcholine receptor activation regulated by aromatic ring dynamics
Zhou Gong, Xu Zhang, … Yunfei Hu·Proceedings of the National Academy of SciencesPeer-reviewed·Mar 7, 2025
- Comparing the conformational diversity of α1A-Adrenoceptor in Micelles and Phospholipid Bilayer Models
Mohammad Hossein Tanipour, Feng‐Jie Wu, … Paul R. Gooley·bioRxiv·Aug 11, 2026
- The role of intrinsically disordered domains in regulating G protein coupled receptor signaling
Jun Zhi Xu, Ruoyi Qiu, … Brian K. Kobilka·Journal of the American Chemical SocietyPeer-reviewed·Dec 27, 2025
- The allosteric mechanism of G-protein-coupled receptors is induced fit, not conformational selection
Kazem Asadollahi, Paul R. Gooley, Thomas R. Weikl·BioEssaysPeer-reviewed·Oct 18, 2025