Bioinformatics AdvancesBioinformaticsPeer-reviewed journal article
wTSA-CRAFT : an open-access web server for rapid analysis of thermal shift assay experiments
Victor ReysiD, Julien KowalewskiiD, Muriel GeliniD, Corinne LionneiD
Abstract
The automated data processing provided by the TSA-CRAFT tool enables now to reach high throughput speed analysis of thermal shift assays. While the software is powerful and freely available, it still requires installation process and command line efforts that could be discouraging. To simplify the procedure, we decided to make it available and easy to use by implementing it with a graphical interface via a web server, enabling a cross-platform usage from any web browsers. We developed a web server embedded version of the TSA-CRAFT tool, enabling a user-friendly graphical interface for formatting and submission of the input file and visualization of the selected thermal denaturation profiles. We describe a typical case study of buffer condition optimization of the biologically relevant APH(3)-IIb bacterial protein in a 96 deep-well thermal shift analysis screening. wTSA-CRAFT is freely accessible for non-commercial usage at https://bioserv.cbs.cnrs.fr/TSA_CRAFT.
- organism: bacteria (other)
- assay: protein structure
- research focus: benchmarking
- research focus: software / tool
- approach: experimental assay
- Citations
- 8
- FWCI
- 0.71
- Field percentile
- top 36%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Inflect: Optimizing Computational Workflows for Thermal Proteome Profiling Data Analysis
Neil A. McCracken, Sarah A. Peck Justice, … Amber L. Mosley·Journal of Proteome ResearchPeer-reviewed·Mar 4, 2021
- Direct aliquoting from a single heated well enables fully automated high-throughput thermal proteome profiling
Mirva Pääkkönen, Iris Purma, … Otto Kauko·bioRxiv·Sep 17, 2026
- Systematic Characterization of Thermal Stability Assay Parameters and Application in Discovery of Peptide-Protein Interactions
Daniel M. Richards, Fangyi Zhai, … Qing Yu·Journal of Proteome ResearchPeer-reviewed·Sep 9, 2026
- Global analysis of thermal and chemical denaturation using CheMelt: Thermodynamic dissection of highly thermostable de novo designed proteins
Vili Lampinen, Osvaldo Burastero, … Magnus Kjærgaard·Protein SciencePeer-reviewed·Sep 30, 2026
- Three Essential Resources to Improve Differential Scanning Fluorimetry (DSF) Experiments
T. Wu, J. Yu, … J. E. Gestwicki·bioRxiv·Mar 22, 2020
- TKSA-MC: A Web Server for rational mutation through the optimization of protein charge interactions
Vinícius G. Contessoto, Vinícius M. de Oliveira, … Vitor B. P. Leite·Proteins Structure Function and BioinformaticsPeer-reviewed·Sep 16, 2018