bioRxivCell BiologyPreprint
Robust and Bright Genetically Encoded Fluorescent Markers for Highlighting Structures and Compartments in Mammalian Cells
A. O. Chertkova, M. Mastop, M. Postma, N. van Bommel, S. van der Niet, K. L. Batenburg, L. Joosen, T. W. J. Gadella, Y. Okada, J. Goedhart
Abstract
To increase our understanding of the inner working of cells, there is a need for specific markers to identify biomolecules, cellular structures and compartments. One type of markers comprises genetically encoded fluorescent probes that are linked with protein domains, peptides and/or signal sequences. These markers are encoded on a plasmid and they allow straightforward, convenient labeling of cultured mammalian cells by introducing the plasmid into the cells. Ideally, the fluorescent marker combines favorable spectroscopic properties (brightness, photostability) with specific labeling of the structure or compartment of interest. Here, we report our ongoing efforts to generate robust and bright genetically encoded fluorescent markers for highlighting structures and compartments in living cells. The plasmids are distributed by addgene: https://www.addgene.org/browse/article/28189953/ O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=71 SRC="FIGDIR/small/160374v2_ufig1.gif" ALT="Figure 1"> View larger version (26K): org.highwire.dtl.DTLVardef@67f3aaorg.highwire.dtl.DTLVardef@ae2235org.highwire.dtl.DTLVardef@47f729org.highwire.dtl.DTLVardef@b3c9d1_HPS_FORMAT_FIGEXP M_FIG C_FIG
- organism: mouse
- assay: fluorescence / live-cell microscopy
- research focus: cell type annotation
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Distinguishing Signal From Autofluorescence In Cryogenic Correlated Light And Electron Microscopy Of Mammalian Cells
S. D. Carter, S. K. Mageswaran, … G. J. Jensen·bioRxiv·Mar 26, 2017
- Tag-stabilized fluorescent protein binders for endogenous cell type-specific protein labelling
Sophie T. Schnider, Carolin Kring, … Anissa Kempf·bioRxiv·Sep 29, 2026
- FRAME-tags: genetically encoded fluorescent markers for multiplexed barcoding and time-resolved tracking of live cells
Andrew V. Anzalone, Miguel Jiménez, Virginia W. Cornish·bioRxiv·Apr 9, 2021
- A genetically encoded marker for imaging membranes of Plasmodium
Leah Zink, Viola Reuschenbach, … Markus Ganter·bioRxiv·Oct 24, 2025
- Plasma membrane labelling efficiency, internalization and partitioning of functionalized fluorescent lipids as a function of lipid structure
Erdinç Sezgin·RSC Chemical BiologyPeer-reviewed·Jan 1, 2025
- HaloTag9: an engineered protein tag to improve fluorophore performance
M. S. Frei, M. Tarnawski, … K. Johnsson·Nature MethodsPeer-reviewed·Dec 16, 2021