Germ Granule Remodeling Reveals Germline Age in Caenorhabditis elegans
Purbasha DasguptaiD, Ryan J LeeiD, Erica DinneeniD, Carlos Giovanni Silva-GarcíaiD
Abstract
Germline aging limits reproductive lifespan, yet quantitative measures of germline age at cellular resolution within intact tissue remain limited. Here, we show that two germline condensates, P granules and Mutator foci, undergo systematic age-associated remodeling in Caenorhabditis elegans, changing in morphology, spatial organization, and mutual associations. From these single-nucleus features, we develop Germ Granule Clock (GG-Clock), an image-based aging clock that accurately predicts chronological age. Intermittent fasting, a pro-longevity intervention, shifts GG-Clock predictions toward a younger germline state, demonstrating the clock's responsiveness to anti-aging interventions. To make the approach broadly usable, we introduce GGProfiler, an open-source tool that automates granule segmentation and feature extraction. Together, our findings establish germ granule architecture as an interpretable, image-based readout of germline aging and provide a platform for quantifying condensate remodeling across genetic and environmental interventions, with potential translation to other systems.
02 /Specification & Classification
Click any tag to browse matching papers- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Notch signaling in germ line stem cells controls reproductive aging in C. elegans
Zuzana Kocsisova, Elena D. Bagatelas, … Kerry Kornfeld·bioRxiv·Mar 4, 2022
- C. elegans hermaphrodites undergo semelparous reproductive death
Carina C. Kern, Shivangi Srivastava, … David Gems·bioRxiv·Nov 16, 2020
- Somatic nuclear blebbing may indicate proliferating germ cells but does not indicate organismal aging in Caenorhabditis elegans
Q. Fan, M.-Q. Dong·bioRxiv·Sep 17, 2022
- Non-autonomy of age-related morphological changes in the C. elegans germline stem cell niche
Nilay Gupta, Mia Sinks, E. Jane Albert Hubbard·DevelopmentPeer-reviewed·Oct 15, 2025
- Statistical image processing quantifies the changes in cytoplasmic texture associated with aging in Caenorhabditis elegans oocytes
Momoko Imakubo, Jun Takayama, … Shuichi Onami·BMC BioinformaticsPeer-reviewed·Feb 17, 2021
- Aging and sperm signals alter DNA break formation and repair in the C. elegans germline
Erik Toraason, Victoria L. Adler, Diana E. Libuda·PLoS GeneticsPeer-reviewed·Nov 7, 2022