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The paper maps G4-protein interactions at human gene promoters using ENCODE data, revealing three distinct binding sites and dynamic regulation by histone modifications.

This study develops and tests modular eDNA sampling systems that enable high filtration volumes and rapid sample collection, demonstrating their utility for ecosystem monitoring in diverse aquatic environments.

This study uses whole-genome sequencing to analyze Enterococcus faecalis isolates from retail meats in Nigeria, identifying antimicrobial resistance genes, virulence factors, and phylogenomic relationships.

The paper evaluates nanopore sequencing for rapid AIV profiling, showing its ability to accurately reconstruct viral genomes and detect RNA modifications.

The paper identifies Vcam1+ fibro-adipogenic progenitors as markers of fatty infiltration in chronic limb threatening ischemia using single-cell transcriptomics in mouse models.

The paper introduces a substring index called the Prokrustean graph to efficiently analyze k-mer-based quantities across different k-mer sizes.

This study uses a multi-ancestry GWAS to identify genetic loci associated with variation in LINE-1 and Alu insertion numbers, highlighting potential regulatory mechanisms and disease links.

This study constructs a water buffalo pangenome using graph genomics, revealing extensive structural variation and population-specific selection signatures in 711 global samples.

The paper characterizes and compares the repeatome of two Cenchrus species to identify subgenome-specific markers.

The paper presents a high-quality reference genome for the Ural Owl and investigates cell culture as a genomic resource for conservation.

YASMA improves sRNA annotation accuracy and reproducibility by balancing sensitivity and specificity across diverse organisms.

The paper presents the first reference genome for the red-fronted brown lemur using portable nanopore sequencing conducted in Madagascar, highlighting its potential for conservation genomics and equitable research practices.

TinkerHap improves phasing accuracy by combining read-based and external phased data, achieving high accuracy for both short and long reads.

This paper introduces Poincare distance measures for genomic and proteomic sequence analysis, showing improved performance in classification tasks compared to existing methods.

The paper constructs a near-complete genome assembly for the bearded dragon Pogona vitticeps and characterizes the Z sex chromosome, identifying key genes involved in sex determination.

This study identifies cell type-specific enhancers by analyzing cis and trans activities using ChIP-STARR-seq in two human cell lines.

The paper investigates transcriptional and morphological changes in three strains of Maudiozyma bulderi at low pH, identifying genes involved in acidophilic adaptation.

This paper introduces MMoCHi, a multimodal classifier for CITE-seq data that improves immune cell subset annotation by integrating transcriptomic and proteomic data.

The paper introduces OpenPedCan, a harmonized multi-omic dataset of pediatric cancer patients, providing integrated genomic, transcriptomic, and proteomic data for research and clinical applications.