Author

A. Geirnaert

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:human· 3 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:development & morphogenesis· 1 Research Focus:differential expression· 1

Frequent Co-Authors

C. Lacroix· 2 shared A. Krzynowek· 1 shared A. R. Hall· 1 shared A. Sontheimer-Phelps· 1 shared A. Tovaglieri· 1 shared B. Liu· 1 shared C. A. Richmond· 1 shared C. Jans· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersEvolutionary Biology

C. Lacroix

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Starvation responses impact interaction dynamics of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis

B. Liu, D. R. Garza, D. Gonze, A. Krzynowek, K. Simoens, K. Bernaerts, A. Geirnaert, K. Faust

This study examines how nutrient scarcity affects the interaction dynamics between Bacteroides thetaiotaomicron and Roseburia intestinalis using in vitro experiments and computational modeling.

bioRxiv · Feb 2, 2023 · PreprintMicrobiology

In vitro gut modeling as a tool for adaptive evolutionary engineering of Lactiplantibacillus plantarum

J. Isenring, A. Geirnaert, A. R. Hall, C. Jans, C. Lacroix, M. J. A. Stevens

This paper uses an in vitro gut model to evolve Lactiplantibacillus plantarum strains adapted to the human colonic environment, identifying beneficial mutations that enhance colonization.

bioRxiv · Oct 21, 2020Evolutionary Biology

Species-specific enhancement of enterohemorrhagic E. Coli pathogenesis mediated by microbiome metabolites

A. Tovaglieri, A. Sontheimer-Phelps, A. Geirnaert, R. Prantil-Baun, D. M. Camacho, D. B. Chou, S. Jalili-Firoozinezhad, T. de Wouters, M. Kasendra, M. Super, M. Cartwright, C. A. Richmond, D. T. Breault, C. Lacroix, D. E. Ingber

The paper identifies human gut microbiome metabolites that enhance EHEC pathogenesis in a human colonic organ chip model, contributing to species-specific susceptibility.

bioRxiv · Jan 7, 2019Bioengineering