Author

A. M. Earl

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 4

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 3 Approach:experimental assay· 3 Research Focus:differential expression· 2 Organism:E. coli· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:ecology & biodiversity· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. L. Manson· 3 shared A. Gnirke· 1 shared A. Grote· 1 shared A. J. Cartagena· 1 shared A. L. Kau· 1 shared A. P. G. Frazzon· 1 shared A. Urhan· 1 shared B. F. Sgardioli· 1 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersMicrobiology

A. L. Manson

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection

M. G. Young, T. J. Straub, C. J. Worby, H. C. Metsky, A. Gnirke, R. A. Bronson, L. R. van Dijk, C. A. Desjardins, C. Matranga, J. Qu, J. B. Villicana, P. Azimzadeh, A. L. Kau, K. W. Dodson, H. L. Schreiber, , A. M. Earl

This study identifies distinct E. coli transcriptional profiles in the guts of recurrent UTI sufferers using a novel pangenome hybrid selection method.

bioRxiv · Feb 29, 2024 · PreprintMicrobiology

The carbapenem inoculum effect provides insight into the molecular mechanisms underlying carbapenem resistance in the Enterobacterales

A. J. Cartagena, K. L. Taylor, L. C. Lopez, J. Su, J. T. Smith, A. L. Manson, J. D. Chen, V. M. Pierce, A. M. Earl, R. P. Bhattacharyya

This study shows that carbapenemase-producing CRE exhibit an inoculum effect, which can mislead susceptibility testing and highlights the need for improved detection methods.

bioRxiv · May 23, 2023 · PreprintMicrobiology

Global diversity of enterococci and description of 18 novel species

J. A. Schwartzman, F. Lebreton, R. Salamzade, M. J. Martin, K. Schaufler, A. Urhan, T. Abeel, I. L. B. C. Camargo, B. F. Sgardioli, J. Prichula, A. P. G. Frazzon, D. Van Tyne, G. Treinish, C. J. Innis, J. A. Wagenaar, , M. S. Gilmore

This study identifies 18 new enterococcal species from global samples, revealing host associations and genetic diversity within the genus.

bioRxiv · May 18, 2023 · PreprintMicrobiology

Transcriptomics reveals how minocycline-colistin synergy overcomes antibiotic resistance in multidrug-resistant Klebsiella pneumoniae

T. Brennan-Krohn, A. Grote, S. Rodriguez, J. E. Kirby, A. M. Earl

This paper identifies a synergistic antibiotic combination effective against multidrug-resistant Klebsiella pneumoniae and characterizes its transcriptional mechanisms.

bioRxiv · Sep 21, 2021Microbiology