Author

Yogesh Kumar

Monash UniversityPrimary ORCID profile (0000-0002-7187-8078 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Yogesh KumariD1 paper · University of Cambridge

Biology Disciplines

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Genomics· 2 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Approach:statistical model· 2 Research Focus:cancer & tumor microenvironment· 1 Assay:ChIP-seq· 1 Assay:CRISPR screen· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Lee H. WongiD· 2 shared Luca PinelloiD· 2 shared Michael J. BulleniD· 2 shared Partha Pratim DasiD· 2 shared Pratibha Tripathi· 2 shared Stuart H. OrkiniD· 2 shared Alan B. Cantor· 1 shared Alireza Ghamari· 1 shared

Activity by Year

2017-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersGenomics

Lee H. WongORCID

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Author profile →

3 papers

Recent·Most cited

A saturating mutagenesis CRISPR-Cas9 mediated functional genomic screen identifies cis- and trans-regulatory elements of Oct4 in embryonic stem cells

Matthew C. Canver, Pratibha Tripathi, Michael J. Bullen, Moshe Olshansky, Yogesh Kumar, Lee H. Wong, Stephen J. Turner, Samuel Lessard, Luca Pinello, Stuart H. Orkin, Partha Pratim Das

The paper identifies cis- and trans-regulatory elements of Oct4 in mESCs using ctSCAN-SMS, showing CREs are more active and conserved than TREs.

Journal of Biological Chemistry · Sep 29, 2020Peer-reviewedGenomics

Histone demethylome map reveals combinatorial gene regulatory functions in embryonic stem cells

Yogesh Kumar, Pratibha Tripathi, Pushkar Dakle, Majid Mehravar, Varun K. Pandey, Michael J. Bullen, Zhongming Zhang, Dhaval Hathiwala, Marc A. Kerenyi, Andrew J. Woo, Alireza Ghamari, Alan B. Cantor, Lee H. Wong, Jonghwan Kim, Kimberly Glass, , Partha Pratim Das

The paper identifies combinatorial functions of histone demethylases in gene regulation of mouse embryonic stem cells by analyzing their genome-wide binding patterns.

bioRxiv · Aug 27, 2020 · PreprintGenomics

Forward-reverse mutation cycles between stages of cancer development

Taobo Hu, Yogesh Kumar, Iram Shazia, Shen-Jia Duan, Yi Li, Lei Chen, Jin-Fei Chen, Rong Yin, Ava Kwong, Gilberto Ka-Kit Leung, Wai-Kin Mat, Zhenggang Wu, Xi Long, Cheuk-Hin Chan, Peggy Lee, , Hong Xue

The paper identifies forward-reverse mutation cycles in cancer development by analyzing LOHs and GOHs across non-tumor, paratumor, and tumor tissues in multiple cancer types.

bioRxiv · Oct 5, 2017 · PreprintCancer Biology

Yogesh Kumar · henhao