Author

Amandine Thibaudeau

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:human· 3 Research Focus:drug response / drug discovery· 2 Assay:imaging· 2 Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Amélie Weiss· 3 shared Christina B. JacobiD· 3 shared Peter SommeriD· 3 shared Adriana BorowaiD· 2 shared Amy B. GoodaleiD· 2 shared Anne Elizabeth CarpenteriD· 2 shared Arnaud OgieriD· 2 shared Beth A. CiminiiD· 2 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Amélie Weiss

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Morphological map of under- and over-expression of genes in human cells

Srinivas Niranj Chandrasekaran, Eric Alix, John Arévalo, Adriana Borowa, Patrick J. Byrne, William G Charles, Zitong Chen, Beth A. Cimini, Boxiong Deng, John G. Doench, Jessica Ewald, Briana Fritchman, Colin J. Fuller, Jedidiah Gaetz, Amy B. Goodale, , Anne Elizabeth Carpenter

The paper presents a comprehensive genetic perturbation dataset using Cell Painting to analyze gene expression effects in human cells, revealing novel gene clusters and functional relationships.

Nature Methods · Aug 1, 2025Peer-reviewedBioinformatics

Pharmacological modulation of developmental and synaptic phenotypes in human SHANK3 deficient stem cell-derived neuronal models

Amandine Thibaudeau, Karen Schmitt, Louise François, Laure Chatrousse, David Hoffmann, Loïc Cousin, Amélie Weiss, Aurore Vuidel, Christina B. Jacob, Peter Sommer, Alexandra Benchoua, Johannes H. Wilbertz

This study screens small molecules in SHANK3-deficient neuronal models to identify compounds that rescue developmental and synaptic defects in Phelan-McDermid syndrome.

Translational Psychiatry · Jun 10, 2024Peer-reviewedNeuroscience

JUMP Cell Painting chemical dataset: Morphological map of 115,796 compounds in human cells

Srinivas Niranj Chandrasekaran, Jeanelle Ackerman, Eric Alix, Dale Michael Ando, John Arévalo, Melissa Bennion, Nicolas Boisseau, Adriana Borowa, Justin D. Boyd, Laurent Brino, Patrick J. Byrne, Hugo Ceulemans, Carolyn Ch’ng, Beth A. Cimini, Djork-Arné Clevert, , Anne Elizabeth Carpenter

Cell Painting images and profiles for 115,796 compounds in U2OS cells from 12 laboratories; 15.2% of analyzed compounds are phenotypically active, and cross-laboratory replicates cut reference-compound activity by 34%.

bioRxiv · Mar 23, 2023 · PreprintBioinformatics✦ In-depth digest