Author

Boxiong Deng

Stanford Medicine

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Bioinformatics· 1 Neuroscience· 1 Physiology· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:drug response / drug discovery· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Sui WangiD· 5 shared Praveen PrakhariD· 2 shared Adriana BorowaiD· 1 shared Agata Zaremba· 1 shared Alán F MuñoziD· 1 shared Alexander Davis· 1 shared Alexander E. DavisiD· 1 shared Alexander Xia· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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5 shared papersBioengineering

Sui WangORCID

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Author profile →

5 papers

Recent·Most cited

Programmable macromolecule delivery via engineered trogocytosis

Xinyi Chen, Yinglin Situ, Yuexuan Yang, Luna Lyu, Mengting Han, Lorenzo Magni, Maylin L. Fu, Boxiong Deng, Sui Wang, Lei S. Qi

This study demonstrates a programmable macromolecule delivery system using engineered trogocytosis to transfer proteins between cells, enabling genome editing and targeted cell ablation.

Nature Cell Biology · Apr 1, 2026Peer-reviewedBioengineering

Deep learning-guided design of cell type-specific AAV promoters

Sean K. Wang, Boxiong Deng, Surag Nair, 任肖白, Jiaying Li, J Tijerina, Praveen Prakhar, Ziming Luo, Chelsea Nnebe, Samuel H. Kim, Yimin Zhou, Sahil Hemant Shah, Alexander Davis, Rohan Mahajan, Yilin Qiao, , Sui Wang

This study designs cell type-specific AAV promoters using deep learning, outperforming rational approaches in mouse retinal cells and showing promise for human applications.

bioRxiv · Jan 14, 2026 · PreprintSynthetic Biology

The Adipomyokine Follistatin-like-1 Restores Cardiovascular Function in a Swine Model of Diabetic Myocardial Infarction

Pilar Ruiz‐Lozano, Shannon C. Kelly, Kleiton Augusto Santos Silva, Taylor J. Kelty, Amira R. Amin, Pamela K. Thorne, Christina M. Mueller, J Zhang, Jan R Ivey, Brittany M. Mezzencella, Ashley N. Clark, Boxiong Deng, Sui Wang, R. Scott Rector, Craig A. Emter, , Darla L. Tharp

This study shows that subcutaneous administration of ngFSTL1 improves cardiac and vascular function in a swine model of diabetic myocardial infarction.

bioRxiv · Oct 15, 2025 · PreprintPhysiology

Morphological map of under- and over-expression of genes in human cells

Srinivas Niranj Chandrasekaran, Eric Alix, John Arévalo, Adriana Borowa, Patrick J. Byrne, William G Charles, Zitong Chen, Beth A. Cimini, Boxiong Deng, John G. Doench, Jessica Ewald, Briana Fritchman, Colin J. Fuller, Jedidiah Gaetz, Amy B. Goodale, , Anne Elizabeth Carpenter

The paper presents a comprehensive genetic perturbation dataset using Cell Painting to analyze gene expression effects in human cells, revealing novel gene clusters and functional relationships.

Nature Methods · Aug 1, 2025Peer-reviewedBioinformatics

Induction of a Muller glial-specific protective pathway safeguards the retina from diabetes induced damage

Cheng‐Hui Lin, Man-Ru Wu, Bogdan Tanasă, Praveen Prakhar, Boxiong Deng, Alexander E. Davis, Liang Li, Alexander Xia, Yang Shan, Patrice Elie Fort, Sui Wang

This study identifies Muller glial cells as sensitive to diabetes and shows that Zfp36 expression in these cells can protect against diabetic retinopathy.

Diabetes · Oct 24, 2024Peer-reviewedNeuroscience