Author
Princeton University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
8 papers
Recent·Most cited
Szi-chieh Yu, J. Alexander Bae, Arie Matsliah, Sven Dorkenwald, Jay Gager, James Hebditch, Ben Silverman, Kyle Patrick Willie, Ryan Willie, Austin Burke, Thomas Macrina, H. Sebastian Seung, Mala Murthy
The paper improves synapse detection in Drosophila brain connectomes using new neural networks, achieving better performance in challenging regions and improved neuron clustering.
bioRxiv · Jul 11, 2025 · PreprintNeuroscience
Zhihao Zheng, Changjoo Park, Eric W. Hammerschmith, Ran Lu, Szi-chieh Yu, Marissa Sorek, Ben Silverman, Chris S. Jordan, Amy Robinson Sterling, William Silversmith, Forrest Collman, H. Sebastian Seung, David W. Tank
The paper maps large-scale neuronal connections in mouse hippocampal CA3, revealing spatially graded mossy fiber inputs and a feedforward inhibitory circuit targeting specific pyramidal cells.
bioRxiv · Jul 9, 2025 · PreprintNeuroscience
J. Alexander Bae, Mahaly Baptiste, Maya R. Baptiste, Caitlyn A. Bishop, Ágnes L. Bodor, Derrick Brittain, Victoria Brooks, JoAnn Buchanan, Daniel J. Bumbarger, Manuel Castro, Brendan Celii, Erick Cobos, Forrest Collman, Nuno Maçarico da Costa, Bethanny P. Danskin, , Chi Zhang
The paper presents a functional connectomics dataset of mouse visual cortex, combining calcium imaging with EM reconstruction to study neural circuits and their connectivity.
Nature · Apr 9, 2025Peer-reviewedNeuroscience
Ashwin Vishwanathan, Alex Sood, Jingpeng Wu, Alexandro D. Ramirez, Runzhe Yang, Nico Kemnitz, Dodam Ih, Nicholas L. Turner, Kisuk Lee, Ignacio Tartavull, William Silversmith, Chris S. Jordan, Celia David, Doug Bland, Amy Robinson Sterling, , Sarah Williams
The paper uses a larval zebrafish connectome to predict neural coding of behavior and shows statistical matches with calcium imaging data.
Nature Neuroscience · Nov 22, 2024Peer-reviewedNeuroscience
Sven Dorkenwald, Arie Matsliah, Amy Robinson Sterling, Philipp Schlegel, Szi-chieh Yu, Claire E. McKellar, Albert Lin, Marta Costa, Katharina Eichler, Yijie Yin, William Silversmith, Casey M Schneider-Mizell, Chris S. Jordan, Derrick Brittain, Akhilesh Halageri, , Jansen Seguido
The paper presents the first neuronal wiring diagram of a whole adult Drosophila brain, revealing synaptic connections and circuit mechanisms underlying sensorimotor behaviors.
Nature · Oct 2, 2024Peer-reviewedNeuroscience
Arie Matsliah, Szi-chieh Yu, Krzysztof Kruk, Doug Bland, Austin Burke, Jay Gager, James Hebditch, Ben Silverman, Kyle Patrick Willie, Ryan Willie, Marissa Sorek, Amy Robinson Sterling, Emil Kind, Dustin Garner, Gizem Sancer, , Gregory S.X.E. Jefferis
The paper completes the list of cell types in the Drosophila optic lobe and identifies connectivity rules, revealing new families and clusters related to visual functions.
Nature · Oct 2, 2024Peer-reviewedNeuroscience
Sven Dorkenwald, Claire E. McKellar, Thomas Macrina, Nico Kemnitz, Kisuk Lee, Ran Lu, Jingpeng Wu, Sergiy Popovych, Eric Mitchell, Barak Nehoran, Zhen Jia, J. Alexander Bae, Shang Mu, Dodam Ih, Manuel Castro, , H. Sebastian Seung
FlyWire enables collaborative proofreading of whole-brain connectomes through an online platform, demonstrating its utility in reconstructing and analyzing mechanosensory neuron circuits.
Nature Methods · Dec 23, 2021Peer-reviewedNeuroscience
Shang Mu, Szi-chieh Yu, Nicholas L. Turner, Claire E. McKellar, Sven Dorkenwald, Forrest Collman, Selden Koolman, Merlin Moore, Sarah Morejohn, Ben Silverman, Kyle Patrick Willie, Ryan Willie, Doug Bland, Austin Burke, Zoe C. Ashwood, , H. Sebastian Seung
The paper reconstructs 3D cell nuclei in a Drosophila brain, identifying over 133,000 nuclei, mostly neurons, and highlights differences in nuclear size and cell density across brain regions.
bioRxiv · Nov 4, 2021 · PreprintNeuroscience