Chantal Ho

Orchestrating and sharing large multimodal data for transparent and reproducible research

The paper introduces a cloud-based platform called ORCESTRA for reproducible processing and sharing of multimodal biomedical data in a FAIR manner.

ePlant in 2021: New Species, Viewers, Data Sets, and Widgets

The paper updates ePlant to support 15 new plant species and adds new viewers and data sets, including single-cell RNA-seq data for Arabidopsis roots.

KuLGaP: A Selective Measure for Assessing Therapy Response in Patient-Derived Xenografts

The paper introduces KuLGaP, a selective measure to assess therapy response in patient-derived xenografts by comparing treatment and control arms, improving accuracy over existing methods.

PharmacoDB: an integrative database for mining in vitro anticancer drug screening studies

PharmacoDB integrates large pharmacogenomic studies to enable comparison and analysis of drug screening data by curating identifiers and standardizing drug response metrics.

Integrative pharmacogenomics to infer large-scale drug taxonomy

This paper introduces DNF, a computational framework that classifies new drugs by integrating structural, perturbation, and sensitivity data to infer drug relationships and taxonomies.