Anthony Mammoliti

Detection of circular RNAs and their potential as biomarkers predictive of drug response

The paper assesses the inter-lab consistency of circular RNA expression in cancer cell lines and identifies factors affecting reproducibility.

PharmacoDB 2.0 : Improving scalability and transparency of in vitro pharmacogenomics analysis

PharmacoDB 2.0 enhances pharmacogenomics analysis by integrating new datasets, implementing FAIR pipelines, and improving drug response analysis tools.

Orchestrating and sharing large multimodal data for transparent and reproducible research

The paper introduces a cloud-based platform called ORCESTRA for reproducible processing and sharing of multimodal biomedical data in a FAIR manner.

Drug Sensitivity Prediction From Cell Line-Based Pharmacogenomics Data: Guidelines for Developing Machine Learning Models

This paper provides guidelines for developing machine learning models to predict drug sensitivity using cell line-based pharmacogenomics data, emphasizing proper training and validation practices.

Creating reproducible pharmacogenomic analysis pipelines

The paper develops reproducible pharmacogenomic analysis pipelines using Common Workflow Language to process breast cancer datasets and share them with a Digital Object Identifier.