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Primary ORCID profile (0000-0001-9576-4449 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints
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8 papers
Recent·Most cited
The paper introduces a Bayesian phylogenetic bootstrap method to improve branch support interpretation in phylogenetics, showing higher expected support for correct branches compared to the frequentist Felsenstein bootstrap.
bioRxiv · Jun 22, 2024Evolutionary Biology
M. Morel, F. Lemoine, A. Zhukova, O. Gascuel
The paper introduces ConDor, a method to detect convergent mutations in protein alignments by combining phylogenetic simulation and comparative analysis, showing improved accuracy on large datasets.
Genome Biology and Evolution · Mar 7, 2024Peer-reviewedEvolutionary Biology
D. Planas, I. Staropoli, V. Michel, F. Lemoine, F. Donati, M. Prot, F. Porrot, F. G. Benhassine, B. Jeyarajah, A. Brisebarre, O. Dehan, L. Avon, W. Bolland, M. Hubert, J. Buchreiser, , O. Schwartz
This study characterizes SARS-CoV-2 variants XBB and BA.2.86/JN.1, finding they show increased fitness and antibody evasion while maintaining antiviral sensitivity.
bioRxiv · Nov 20, 2023 · PreprintMicrobiology
R. Suspene, K. A. Raymond, L. Boutin, S. Guillier, F. Lemoine, O. Ferraris, J.-N. Tournier, F. Iseni, E. Simon-Loriere, J.-P. Vartanian
The paper identifies APOBEC3F as the main source of hypermutation in MPXV during the 2022 outbreak, showing its role in generating G->A mutations and subsequent viral evolution.
bioRxiv · Jan 6, 2023 · PreprintMicrobiology
F. Touret, E. Giraud, J. Bourret, F. Donati, J. Tran-Rajau, J. Chiaravalli, F. Lemoine, F. Agou, E. Simon-Loriere, S. Van Der Werf, X. de Lamballerie
This study evaluates the neutralizing activity of monoclonal antibodies against SARS-CoV-2 Omicron sub-lineages and finds reduced efficacy against several variants.
bioRxiv · Dec 22, 2022Microbiology
D. Planas, N. Saunders, P. Maes, F. G. Benhassine, C. Planchais, F. Porrot, I. Staropoli, F. Lemoine, H. Pere, D. Veyer, J. Puech, J. Rodary, W. H. Bolland, J. Buchrieser, G. Baele, , O. Schwartz
This study shows that the Omicron variant of SARS-CoV-2 is resistant to most monoclonal antibodies and vaccine-induced antibodies, with reduced neutralization compared to Delta.
bioRxiv · Dec 14, 2021Immunology
M. Davila Felipe, J.-B. Domelevo Entfellner, F. Lemoine, J. Truszkowski, O. Gascuel
The paper analyzes the transfer distance and its normalization constant in phylogenetic trees, showing its asymptotic behavior and statistical significance.
bioRxiv · Jul 13, 2018Evolutionary Biology
F. Lemoine, J.-B. Domelevo Entfellner, E. Wilkinson, T. De Oliveira, O. Gascuel
The paper revises Felsensteins bootstrap method to improve support values for deep branches in large phylogenies without creating false supports.
bioRxiv · Jun 23, 2017Evolutionary Biology