Author

Florian Müller

Institut Pasteur

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Microbiology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Organism:chicken / avian· 1 Research Focus:development & morphogenesis· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Alejandro BuschiazzoiD· 1 shared Asier Sáez‐CirióniD· 1 shared Ben ScheresiD· 1 shared Bertrand D. E. RaynaliD· 1 shared Carmen BuchrieseriD· 1 shared Chloé SturmachiD· 1 shared Christian WeberiD· 1 shared Christophe RusniokiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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1 shared paperMicrobiology

Alejandro BuschiazzoORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

IMAGENE: Single-cell association of live cell imaging and gene expression profiles of non-adherent cells through photoactivatable adhesives

Maria Isabella Gariboldi, Chloé Sturmach, Solène Bernard, Christian Weber, Maël Gourvès, Yuki Umeda, Xueyang Li, Shinya Yamahira, Julien Fernandes, Asier Sáez‐Cirión, Satoshi Yamaguchi, Florian Müller

The paper introduces IMAGENE, a pipeline that links live cell imaging and gene expression in non-adherent cells using photoactivatable adhesives and machine learning.

bioRxiv · Jan 22, 2026 · PreprintBioengineering

Bacterial targeting of host paraspeckles uncovers a new SFPQ-based regulation

Sonia Nicchi, Sonia Mondino, Christophe Rusniok, Nassim Mahtal, Bertrand D. E. Raynal, Rayen Elj, Quentin Giai Gianetto, Joaquín Dalla Rizza, Nicole Larrieux, Jessica E. Martyn, Hanno Schoeler, Sandrine Schmutz, Florian Müller, Mariette Matondo, Alejandro Buschiazzo, , Monica Rolando

This study identifies L. pneumophila's LpDot1 protein as a bacterial effector that modifies SFPQ, disrupting paraspeckle organization and host splicing, leading to alternative splice variants of infection-related genes.

bioRxiv · Jan 12, 2026 · PreprintMicrobiology

A PLETHORA transcription factor shapes cucumber shoot architecture

Merijn H. L. Kerstens, Florian Müller, Kelvin Adema, Olga Kulikova, Magdalena Lastdrager, Ben Scheres, Viola Willemsen

This study investigates the role of CsPLT3/7 transcription factors in cucumber shoot development, finding conserved and diversified functions across species.

bioRxiv · Sep 18, 2025 · PreprintPlant Biology