Author

H. Balci

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Biophysics· 6 Biochemistry· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 7 Research Focus:chromatin & epigenetic regulation· 4 Assay:DNA methylation· 3 Organism:human· 3 Research Focus:cell type annotation· 2 Research Focus:cell signaling & trafficking· 1 Research Focus:differential expression· 1 Assay:fluorescence / live-cell microscopy· 1

Frequent Co-Authors

P. Gyawali· 4 shared S. G. Kodikara· 4 shared G. Mustafa· 3 shared S. Shiekh· 3 shared A. Jakli· 2 shared M. E. Hoque· 2 shared S. Sprunt· 2 shared A. Jack· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersBiophysics

P. Gyawali

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

Liquid Crystalline Layering and Divalent Cations Cooperatively Enhance DNA Condensation

S. G. Kodikara, P. Gyawali, J. T. Gleeson, A. Jakli, S. Sprunt, H. Balci

This study investigates how liquid crystalline layering and divalent cations affect DNA condensation stability across varying temperatures and Mg2+ concentrations.

bioRxiv · Aug 29, 2023 · PreprintBiophysics

Stability of End-to-End Base Stacking Interactions in Highly Concentrated DNA Solutions

S. G. Kodikara, P. Gyawali, J. Gleeson, A. Jakli, S. Sprunt, H. Balci

This study examines the thermal stability of end-to-end base stacking interactions in DNA bilayers by analyzing SAXS data from GDNA constructs with different terminal base-pairs.

bioRxiv · Jan 25, 2023Biophysics

Impact of Shelterin Complex on Telomere Accessibility

S. Shiekh, A. Jack, G. Mustafa, S. G. Kodikara, P. Gyawali, M. E. Hoque, A. Yildiz, H. Balci

The paper measures how POT1 and a four-component shelterin complex affect telomere accessibility using PNA probes and FRET-PAINT, finding shelterin provides stronger protection than POT1 alone.

bioRxiv · May 24, 2022 · PreprintBiophysics

Rtt105 configurationally staples RPA and blocks facilitated exchange and interactions with RPA-interacting proteins

S. Kuppa, J. Deveryshetty, R. Chadda, J. Mattice, N. Pokhrel, V. Kaushik, A. Patterson, N. Dhingra, S. Pangeni, M. K. Sadauskas, S. Shiekh, H. Balci, T. Ha, X. Zhao, B. Bothner, E. Antony

This study shows Rtt105 binds to RPA, staples it, and blocks RIP interactions without ssDNA, while stabilizing RPA-ssDNA filaments with ssDNA.

bioRxiv · Feb 5, 2022 · PreprintBiochemistry

A Single Molecule Investigation of I-Motif: Stability, Folding Kinetics, and Potential as an In-situ pH Sensor

G. Mustafa, P. Gyawali, J. A. Taylor, P. Maleki, M. V. Nunez, M. Guntrum, H. Balci

The paper uses single molecule FRET to study i-motif stability, folding kinetics, and pH sensing properties in human telomeric sequences.

bioRxiv · Dec 17, 2021 · PreprintBiophysics

Emerging Accessibility Patterns in Long Telomeric Overhangs

S. Shiekh, G. Mustafa, S. G. Kodikara, M. E. Hoque, E. Yokie, J. J. Portman, H. Balci

The paper investigates accessibility patterns in human telomeric overhangs using single-molecule experiments and computational modeling, revealing periodic accessibility changes related to G-quadruplex folding.

bioRxiv · Nov 24, 2021 · PreprintBiophysics

Targeting G-quadruplex Forming Sequences with Cas9

H. Balci, V. Globyte, C. Joo

This study investigates how G-quadruplex forming sequences affect CRISPR-Cas9 complex structure and dynamics using single molecule FRET.

bioRxiv · Sep 19, 2020Biophysics