Author

H. Vlamakis

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 2 Biochemistry· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Assay:metagenomics· 3 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:host-pathogen & immune response· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

R. J. Xavier· 4 shared C. Huttenhower· 2 shared D. Sergio· 2 shared S. Bae· 2 shared A. A. Ananthakrishnan· 1 shared A. Bergerat· 1 shared A. Cher· 1 shared A. Dugan· 1 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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4 shared papersImmunology

R. J. Xavier

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Lectin-Seq: a method to profile lectin-microbe interactions in native communities

R. L. McPherson, C. R. Isabella, R. L. Walker, D. Sergio, S. Bae, T. Gaca, S. Raman, L. T. T. Nguyen, D. A. Wesener, M. Halim, M. G. Wuo, A. Dugan, R. Kerby, S. Ghosh, F. E. Rey, , L. L. Kiessling

Lectin-Seq profiles lectin-microbe interactions in human fecal microbiota, revealing distinct binding preferences for MBL and hItln1.

bioRxiv · Dec 14, 2022Biochemistry

Remodeling of human colon plasma cell repertoire in ulcerative colitis

J. F. Scheid, B. Eraslan, A. Hudak, E. Brown, D. Sergio, T. M. Delorey, D. Phillips, A. Lefkovith, A. T. Jess, L. W. Duck, C. O. Elson, H. Vlamakis, J. Deguine, A. A. Ananthakrishnan, D. B. Graham, , R. J. Xavier

This study characterizes the remodeling of the human colon plasma cell repertoire in ulcerative colitis, showing clonal expansion, isotype skewing, and altered gene expression associated with inflammation.

bioRxiv · Feb 14, 2022 · PreprintImmunology

Human gut bacteria produce TH17-modulating bile acid metabolites

D. Paik, L. Yao, Y. Zhang, S. Bae, G. D. D'Agostino, E. Kim, E. A. Franzosa, J. Avila-Pacheco, J. E. Bisanz, C. K. Rakowski, H. Vlamakis, R. J. Xavier, P. J. Turnbaugh, R. S. Longman, M. R. Krout, , A. S. Devlin

This study identifies human gut bacteria that produce TH17-modulating bile acid metabolites, showing reduced levels in IBD patients.

bioRxiv · Jan 8, 2021 · PreprintImmunology

Delivery mode impacts newborn gut colonization efficiency

C. Mitchell, L. Hogstrom, A. M. Bryant, A. Bergerat, A. Cher, S. Pochan, P. Herman, M. Carrigan, K. Sharp, C. Huttenhower, E. S. Lander, H. Vlamakis, R. J. Xavier, M. Yassour

This study investigates how delivery mode affects newborn gut microbiome colonization, finding that C-section infants lack Bacteroides species, but these are not due to birth canal exposure.

bioRxiv · Jan 29, 2020 · PreprintMicrobiology