Author

J. Pipoli da Fonseca

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Organism:C. elegans· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

M. Monot· 2 shared A. Bhargava· 1 shared A. Morillon· 1 shared B. Dupuy· 1 shared D. Foretek· 1 shared E. Auria· 1 shared G. Beauclair· 1 shared J.-F. Mariet· 1 shared

Activity by Year

2022-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersMicrobiology

M. Monot

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

MicrobiologybioRxivPreprintNov 29, 2022

The cell wall lipoprotein CD1687 acts as a DNA binding protein during deoxycholate-induced biofilm formation in Clostridioides difficile

E. Auria, L. Hunault, P. ENGLAND…·B. Dupuy

This study identifies CD1687 as a DNA-binding lipoprotein required for DCA-induced biofilm formation in C. difficile by promoting cell-matrix interactions through eDNA binding.

DOI 10.1101/2022.11.29.518320

C. elegansexperimental assay

𝕏 PostBluesky

MicrobiologybioRxivPreprintApr 29, 2022

Core genome sequencing and genotyping of Leptospira interrogans in clinical samples by target capture sequencing

L. Grillova, T. Cokelaer, J.-F. Mariet…·M. PICARDEAU

This study uses target capture sequencing to genotype Leptospira interrogans strains from clinical samples, identifying key serovars with high coverage and accuracy.

DOI 10.1101/2022.04.29.490004

viruswhole-genome sequencing

𝕏 PostBluesky

MicrobiologybioRxivFeb 25, 2022

Transcriptomic analysis of sorted lung cells revealed a proviral activity of the NF- κB pathway towards SARS-CoV-2

A. Bhargava, U. Szachnowski, M. Chazal…·N. Jouvenet

The paper analyzes transcriptomic data from sorted SARS-CoV-2 infected lung cells to show the NF-κB pathway promotes viral replication while CYLD inhibits it.

DOI 10.1016/j.isci.2023.108449

humanbulk RNA-seq

𝕏 PostBluesky