Author

J. S. Chapman

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Developmental Biology· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:flow cytometry· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. A. Rao· 1 shared A. B. Olshen· 1 shared A. Boissonnas· 1 shared A. Chengrui· 1 shared A. Corsinotti· 1 shared A. Diaz· 1 shared A. Edwards· 1 shared A. I. Daud· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperImmunology

A. A. Rao

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Author profile →

2 papers

Recent·Most cited

Thymic epithelial cell fate and potency in early organogenesis assessed by single cell transcriptional and functional analysis.

A. Chengrui, A. M. Farley, S. Palmer, D. Liu, A. I. Kousa, P. Rouse, V. Major, J. Sweetman, J. Morys, A. Corsinotti, J. Nichols, J. Ure, R. McLay, L. Boulter, J. S. Chapman, , C. C. Blackburn

The paper uses single-cell RNA sequencing to analyze thymic epithelial cell fate and potency in early mouse thymus development, revealing sublineage-primed progenitors and functional bipotency changes.

bioRxiv · Jun 7, 2023 · PreprintDevelopmental Biology

A Pan-Cancer Census of Dominant Tumor Immune Archetypes

A. J. Combes, B. Samad, J. Tsui, N. W. Chew, P. Yan, G. C. Reeder, D. Kushnoor, A. Shen, B. Davidson, A. J. Barczac, M. Adkisson, A. Edwards, M. Naser, K. C. Barry, T. Courau, , M. F. Krummel

The paper identifies dominant immune system archetypes across 364 tumors from 12 cancer types using flow cytometry and transcriptomic data, linking them to tumor biology classifications.

bioRxiv · Apr 26, 2021 · PreprintImmunology